UniProt P0DOY8
50S ribosomal protein L6 (P0DOY8)
50S ribosomal protein L6 (UniProt P0DOY8): 78 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0DOY8
- Protein
- 50S ribosomal protein L6
- Experimental structures
- 78
- Predicted models
- 1
- Ligands
- 1
Structures
79 records of P0DOY8 in the MolNFT archive: 78 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1VY4 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond… | x-ray diffraction | BH, DH | — | — |
| 1VY5 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide… | x-ray diffraction | BH, DH | — | — |
| 4L71 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | x-ray diffraction | RH, YH | — | — |
| 4TUA | Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome | x-ray diffraction | RH, YH | — | — |
| 4TUB | Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome | x-ray diffraction | RH, YH | — | — |
| 4TUC | Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome | x-ray diffraction | RH, YH | — | — |
| 4TUD | Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome | x-ray diffraction | RH, YH | — | — |
| 4TUE | Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome | x-ray diffraction | RH, YH | — | — |
| 5OT7 | Elongation factor G-ribosome complex captures in the absence of inhibitors. | electron microscopy | k | — | — |
| 5VPO | The 70S P-site ASL SufA6 complex | x-ray diffraction | RH, YH | — | — |
| 5VPP | The 70S P-site tRNA SufA6 complex | x-ray diffraction | RH, YH | — | — |
| 5W4K | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound… | x-ray diffraction | 1H, 2H | MG | — |
| 5WIS | Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to… | x-ray diffraction | 1H, 2H | MG | — |
| 5WIT | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to… | x-ray diffraction | 1H, 2H | MG | — |
| 6BUW | Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site. | x-ray diffraction | RH, YH | — | — |
| 6BZ7 | Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site. | x-ray diffraction | RH, YH | — | — |
| 6CZR | The structure of amicetin bound to the 70S ribosome | x-ray diffraction | 1H, 2H | MG | — |
| 6FKR | Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus… | x-ray diffraction | 1H, 2H | MG | — |
| 6GSJ | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the… | x-ray diffraction | 51, 59 | — | — |
| 6GSL | Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the… | x-ray diffraction | 51, 59 | — | — |
| 6GZQ | T. thermophilus hibernating 70S ribosome | electron microscopy | G1 | — | — |
| 6GZX | T. thermophilus hibernating 100S ribosome (ice) | electron microscopy | G1, G2 | — | — |
| 6ND5 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and… | x-ray diffraction | 1H, 2H | MG | — |
| 6ND6 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with erythromycin and bound… | x-ray diffraction | 1H, 2H | MG | — |
| 6NDK | Structure of ASLSufA6 A37.5 bound to the 70S A site | x-ray diffraction | RH, YH | — | — |
| 6NSH | Modified ASL proline bound to Thermus thermophilus 70S (near-cognate) | x-ray diffraction | RH, YH | — | — |
| 6NUO | Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | x-ray diffraction | RH, YH | — | — |
| 6NWY | Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate) | x-ray diffraction | RH, YH | — | — |
| 6O3M | Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate) | x-ray diffraction | RH, YH | — | — |
| 6OF1 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with dirithromycin and bound… | x-ray diffraction | 1H, 2H | MG | — |
| 6OF6 | Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site | x-ray diffraction | RH, YH | MG | — |
| 6OJ2 | Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site | x-ray diffraction | RH, YH | MG | — |
| 6OPE | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site | x-ray diffraction | RH, YH | — | — |
| 6ORD | Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site | x-ray diffraction | RH, YH | MG | — |
| 6OXA | Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU) | x-ray diffraction | RH, YH | — | — |
| 6QNR | 70S ribosome elongation complex (EC) with experimentally assigned potassium ions | x-ray diffraction | 51, 59 | — | — |
| 6UCQ | Crystal structure of the Thermus thermophilus 70S ribosome recycling complex | x-ray diffraction | 1H, 2H | MG | — |
| 6XQE | Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA… | x-ray diffraction | 1H, 2H | MG | — |
| 7AZS | 70S thermus thermophilus ribosome with bound antibiotic lead SEQ-569 | x-ray diffraction | L6A, L6B | — | — |
| 7JQL | Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and… | x-ray diffraction | 1H, 2H | MG | — |
| 7LH5 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and… | x-ray diffraction | BH, DH | MG | — |
| 7MD7 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium… | x-ray diffraction | 1H, 2H | MG | — |
| 7RQ8 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin… | x-ray diffraction | 1H, 2H | MG | — |
| 7RQA | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site… | x-ray diffraction | 1H, 2H | MG | — |
| 7RQC | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site… | x-ray diffraction | 1H, 2H | MG | — |
| 7RQD | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site… | x-ray diffraction | 1H, 2H | MG | — |
| 7RQE | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site… | x-ray diffraction | 1H, 2H | MG | — |
| 7U2H | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated… | x-ray diffraction | 1H, 2H | MG | — |
| 7U2I | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated… | x-ray diffraction | 1H, 2H | MG | — |
| 7U2J | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated… | x-ray diffraction | 1H, 2H | MG | — |
| 8CVJ | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated… | x-ray diffraction | 1H, 2H | MG | — |
| 8CVK | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated… | x-ray diffraction | 1H, 2H | MG | — |
| 8CVL | Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated… | x-ray diffraction | 1H, 2H | MG | — |
| 8FC1 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A… | x-ray diffraction | 1H, 2H | MG | — |
| 8FC2 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A… | x-ray diffraction | 1H, 2H | MG | — |
| 8FC3 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A… | x-ray diffraction | 1H, 2H | MG | — |
| 8FC4 | Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with… | x-ray diffraction | 1H, 2H | MG | — |
| 8FC6 | Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with… | x-ray diffraction | 1H, 2H | MG | — |
| 8FON | Crystal structure of tRNA^Lys(SUU) bound to AUA codon in the ribosomal P site | x-ray diffraction | RH, YH | — | — |
| 8G2B | Crystal structure of the A2503-C2,C8-dimethylated Thermus thermophilus 70S ribosome in complex with… | x-ray diffraction | 1H, 2H | MG | — |
19 records more on the page itself.
Ligands
- MG · Magnesium ion · in 49 records
Experiment against prediction
- 6ORD chain YH against the predicted model P0DOY8: TM-score 0.99, RMSD 0.54 Å
- 6NUO chain YH against the predicted model P0DOY8: TM-score 0.99, RMSD 0.55 Å
- 8FON chain YH against the predicted model P0DOY8: TM-score 0.99, RMSD 0.59 Å
- 6NDK chain YH against the predicted model P0DOY8: TM-score 0.99, RMSD 0.61 Å
- 8FC6 chain 1H against the predicted model P0DOY8: TM-score 0.99, RMSD 0.68 Å
- 8FC1 chain 1H against the predicted model P0DOY8: TM-score 0.99, RMSD 0.67 Å
- 8FC3 chain 1H against the predicted model P0DOY8: TM-score 0.99, RMSD 0.68 Å
- 8T8B chain 1H against the predicted model P0DOY8: TM-score 0.98, RMSD 0.69 Å
- 8UVR chain 1H against the predicted model P0DOY8: TM-score 0.98, RMSD 0.70 Å
- 8CVL chain 1H against the predicted model P0DOY8: TM-score 0.98, RMSD 0.68 Å
Elsewhere
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