UniProt P0DM37
Photosystem II protein Y (P0DM37)
Photosystem II protein Y (UniProt P0DM37): 47 experimental structures and 1 predicted model on GenesisL1, 4 ligands bound, 23 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0DM37
- Protein
- Photosystem II protein Y
- Experimental structures
- 47
- Predicted models
- 1
- Ligands
- 4
- Pockets
- 23 · 23 records with a druggable one
Structures
48 records of P0DM37 in the MolNFT archive: 47 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | R | — | — |
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | R | — | — |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | R | — | — |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | R | — | — |
| 5GTH | Native XFEL structure of photosystem II (dark dataset) | x-ray diffraction | R | SQD, HEM | 1 (best 0.82) |
| 5GTH | Native xfel structure of photosystem II (dark dataset) | x-ray diffraction | R | — | — |
| 5GTI | Native XFEL structure of photosystem II (two flash dataset) | x-ray diffraction | R | SQD, HEM | 1 (best 0.82) |
| 5GTI | Native xfel structure of photosystem II (two flash dataset) | x-ray diffraction | R | — | — |
| 5WS5 | Native XFEL structure of photosystem II (preflash dark dataset) | x-ray diffraction | R | HEM, SQD | 1 (best 0.79) |
| 5WS5 | Native xfel structure of photosystem II (preflash dark dataset) | x-ray diffraction | R | HEM, SQD | — |
| 5WS6 | Native xfel structure of photosystem II (preflash two-flash dataset | x-ray diffraction | R | HEM, SQD | — |
| 6JLJ | Xfel structure of cyanobacterial photosystem II (dark state, DATASET1) | x-ray diffraction | R | DGD, HEM, SQD | — |
| 6JLK | XFEL structure of cyanobacterial photosystem II (1F state, dataset1) | x-ray diffraction | R | DGD, HEM, SQD | 1 (best 0.75) |
| 6JLK | Xfel structure of cyanobacterial photosystem II (1F state, DATASET1) | x-ray diffraction | R | DGD, HEM, SQD | — |
| 6JLL | XFEL structure of cyanobacterial photosystem II (2F state, dataset1) | x-ray diffraction | R | DGD, HEM, SQD | 1 (best 0.81) |
| 6JLL | Xfel structure of cyanobacterial photosystem II (2F state, DATASET1) | x-ray diffraction | R | DGD, HEM, SQD | — |
| 6JLM | XFEL structure of cyanobacterial photosystem II (dark state, dataset2) | x-ray diffraction | R | DGD, HEM, SQD | 1 (best 0.76) |
| 6JLM | Xfel structure of cyanobacterial photosystem II (dark state, DATASET2) | x-ray diffraction | R | DGD, HEM, SQD | — |
| 6JLN | XFEL structure of cyanobacterial photosystem II (1F state, dataset2) | x-ray diffraction | R | DGD, HEM, SQD | 1 (best 0.79) |
| 6JLN | Xfel structure of cyanobacterial photosystem II (1F state, DATASET2) | x-ray diffraction | R | DGD, HEM, SQD | — |
| 6JLO | Xfel structure of cyanobacterial photosystem II (2F state, DATASET2) | x-ray diffraction | R | DGD, HEM, SQD | — |
| 6JLP | XFEL structure of cyanobacterial photosystem II (3F state, dataset2) | x-ray diffraction | R | DGD, HEM, SQD | 1 (best 0.75) |
| 6JLP | Xfel structure of cyanobacterial photosystem II (3F state, DATASET2) | x-ray diffraction | R | DGD, HEM, SQD | — |
| 7CJI | Photosystem II structure in the S1 state | x-ray diffraction | R | SQD, HEM | — |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | R | SQD, HEM | 1 (best 0.80) |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | R | SQD, HEM | — |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | R | SQD, HEC | 1 (best 0.79) |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | R | SQD, HEC | — |
| 7D1T | Cryo-EM Structure of PSII at 1.95 angstrom resolution | electron microscopy | R, r | HEM, SQD | — |
| 7D1T | Cryo-EM structure of psii at 1.95 ångström resolution | electron microscopy | R, r | HEM, SQD | — |
| 7D1U | Cryo-EM Structure of PSII at 2.08 angstrom resolution | electron microscopy | R, r | SQD, HEM | 1 (best 0.76) |
| 7D1U | Cryo-EM structure of psii at 2.08 ångström resolution | electron microscopy | R, r | SQD, HEM | — |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | R | SQD, HEM | 1 (best 0.65) |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | R | SQD, HEM | — |
| 8IR5 | XFEL structure of cyanobacterial photosystem II under dark conditions | x-ray diffraction | R | HEM, SQD | 1 (best 0.79) |
| 8IR6 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 20-nanosecond delay | x-ray diffraction | R | HEM, SQD | 1 (best 0.80) |
| 8IR7 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay | x-ray diffraction | R | HEM, SQD | 1 (best 0.72) |
| 8IR8 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 1-microsecond delay | x-ray diffraction | R | HEM, SQD | 1 (best 0.79) |
| 8IR9 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay | x-ray diffraction | R | HEM, SQD | 1 (best 0.79) |
| 8IRA | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond… | x-ray diffraction | R | HEM, SQD | 1 (best 0.80) |
| 8IRB | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay | x-ray diffraction | R | HEM, SQD | 1 (best 0.79) |
| 8IRC | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay… | x-ray diffraction | R | HEM, SQD | 1 (best 0.80) |
| 8IRD | XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 20-nanosecond… | x-ray diffraction | R | HEM, SQD | 1 (best 0.80) |
| 8IRE | XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 200-nanosecond… | x-ray diffraction | R | HEM, SQD | 1 (best 0.79) |
| 8IRF | XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 1-microsecond… | x-ray diffraction | R | HEM, SQD | 1 (best 0.79) |
| 8IRG | XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 30-microsecond… | x-ray diffraction | R | HEM, SQD | — |
| 8IRI | XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 5-millisecond… | x-ray diffraction | R | HEM, SQD | — |
| P0DM37 | AlphaFold monomer V2.0 prediction for photosystem II protein Y (P0DM37) | predicted | A | — | — |
Ligands
Experiment against prediction
- 5WS6 chain R against the predicted model P0DM37: TM-score 0.90, RMSD 0.53 Å
- 8IR6 chain R against the predicted model P0DM37: TM-score 0.90, RMSD 0.53 Å
- 8IRB chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.53 Å
- 8IRF chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.53 Å
- 8IRI chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.53 Å
- 8IR7 chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.53 Å
- 8IRA chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.53 Å
- 8IR9 chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.54 Å
- 8IRD chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.54 Å
- 8IR5 chain R against the predicted model P0DM37: TM-score 0.89, RMSD 0.54 Å
Elsewhere
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