UniProt P0CX40
40S ribosomal protein S8-B (P0CX40)
40S ribosomal protein S8-B (UniProt P0CX40): 13 experimental structures and 1 predicted model on GenesisL1, 13 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0CX40
- Protein
- 40S ribosomal protein S8-B
- Experimental structures
- 13
- Predicted models
- 1
- Pockets
- 13 · 9 records with a druggable one
Structures
14 records of P0CX40 in the MolNFT archive: 13 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 7ZUW | Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae | electron microscopy | AI | — | 1 (best 0.87) |
| 7ZUX | Collided ribosome in a disome unit from S. cerevisiae | electron microscopy | DI | — | 1 (best 0.86) |
| 8BQD | Yeast 80S ribosome in complex with Map1 (conformation 1) | electron microscopy | V | — | 1 (best 0.86) |
| 8C83 | Cryo-EM structure of in vitro reconstituted Otu2-bound Ub-40S complex | electron microscopy | V | — | 3 (best 0.85) |
| 8CCS | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | electron microscopy | l | — | — |
| 8CDL | 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex | electron microscopy | l | — | 1 (best 0.87) |
| 8CDR | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the… | electron microscopy | l | — | — |
| 8CEH | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the… | electron microscopy | l | — | 1 (best 0.85) |
| 8CF5 | Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the… | electron microscopy | l | — | 2 (best 0.87) |
| 8CG8 | Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the… | electron microscopy | l | — | 1 (best 0.86) |
| 8CGN | Non-rotated 80S S. cerevisiae ribosome with ligands | electron microscopy | l | — | 1 (best 0.85) |
| 8CIV | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the… | electron microscopy | l | — | — |
| 8CMJ | Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of… | electron microscopy | l | — | — |
| P0CX40 | AlphaFold monomer V2.0 prediction for 40S ribosomal protein S8-B (P0CX40) | predicted | A | — | 1 (best 0.31) |
Experiment against prediction
- 8CCS chain l against the predicted model P0CX40: TM-score 0.98, RMSD 0.66 Å
- 8C83 chain V against the predicted model P0CX40: TM-score 0.98, RMSD 0.69 Å
- 8CDR chain l against the predicted model P0CX40: TM-score 0.98, RMSD 0.73 Å
- 8CF5 chain l against the predicted model P0CX40: TM-score 0.98, RMSD 0.73 Å
- 8CGN chain l against the predicted model P0CX40: TM-score 0.98, RMSD 0.73 Å
- 8CIV chain l against the predicted model P0CX40: TM-score 0.98, RMSD 0.76 Å
- 8CEH chain l against the predicted model P0CX40: TM-score 0.98, RMSD 0.79 Å
- 8BQD chain V against the predicted model P0CX40: TM-score 0.98, RMSD 0.81 Å
- 7ZUX chain DI against the predicted model P0CX40: TM-score 0.98, RMSD 0.80 Å
- 8CDL chain l against the predicted model P0CX40: TM-score 0.98, RMSD 0.80 Å
Elsewhere
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