UniProt P0CG63
Ubiquitin (P0CG63)
Ubiquitin (UniProt P0CG63): 14 experimental structures and 1 predicted model on GenesisL1, 6 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0CG63
- Protein
- Ubiquitin
- Experimental structures
- 14
- Predicted models
- 1
- Pockets
- 6 · 3 records with a druggable one
Structures
15 records of P0CG63 in the MolNFT archive: 14 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3OLM | Structure and Function of a Ubiquitin Binding Site within the Catalytic Domain of a HECT Ubiquitin… | x-ray diffraction | D | — | — |
| 3OLM | Structure and function of a ubiquitin binding site within the catalytic domain of a hect ubiquitin… | x-ray diffraction | D | — | — |
| 4HCN | Crystal structure of Burkholderia pseudomallei effector protein CHBP in complex with ubiquitin | x-ray diffraction | B | — | — |
| 4HCN | Crystal structure of burkholderia pseudomallei effector protein chbp in complex with ubiquitin | x-ray diffraction | B | — | — |
| 4NNJ | Crystal structure of Uba1 in complex with ubiquitin-AMP and thioesterified ubiquitin | x-ray diffraction | B, D, E | — | — |
| 4NNJ | Crystal structure of UBA1 in complex with ubiquitin-AMP and thioesterified ubiquitin | x-ray diffraction | B, D, E | — | — |
| 4Q5E | Shigella Effector Kinase OspG bound to E2-Ub UbcH7-Ub Conjugate | x-ray diffraction | B | — | — |
| 4Q5E | Shigella effector kinase ospg bound to E2-ub UBCH7-ub conjugate | x-ray diffraction | B | — | — |
| 4Q5H | Shigella Effector Kinase OspG bound to AMPPNP and E2-Ub UbcH7-Ub Conjugate | x-ray diffraction | B | — | — |
| 4Q5H | Shigella effector kinase ospg bound to amppnp and E2-ub UBCH7-ub conjugate | x-ray diffraction | B | — | — |
| 8DAT | Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties in presence of… | electron microscopy | J, K, L | — | 1 (best 0.69) |
| 8DAU | Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two folded ubiquitin moieties and one… | electron microscopy | I, J, K | — | 3 (best 0.83) |
| 8DAV | Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to two ubiquitin moieties and one unfolded… | electron microscopy | I, J, K | — | 2 (best 0.71) |
| 8DAW | Saccharomyces cerevisiae Ufd1/Npl4/Cdc48 complex bound to three ubiquitin moieties and one unfolded… | electron microscopy | I, J, K, L | — | — |
| P0CG63 | AlphaFold monomer V2.0 prediction for polyubiquitin (P0CG63) | predicted | A | — | — |
Experiment against prediction
- 3OLM chain D against the predicted model P0CG63: TM-score 0.96, RMSD 0.64 Å
- 3OLM chain D against the predicted model P0CG63: TM-score 0.96, RMSD 0.64 Å
- 4Q5H chain B against the predicted model P0CG63: TM-score 0.95, RMSD 0.49 Å
- 4Q5H chain B against the predicted model P0CG63: TM-score 0.95, RMSD 0.49 Å
- 4Q5E chain B against the predicted model P0CG63: TM-score 0.95, RMSD 0.50 Å
- 4Q5E chain B against the predicted model P0CG63: TM-score 0.95, RMSD 0.50 Å
- 8DAV chain J against the predicted model P0CG63: TM-score 0.92, RMSD 1.21 Å
- 4NNJ chain D against the predicted model P0CG63: TM-score 0.90, RMSD 1.20 Å
- 4NNJ chain D against the predicted model P0CG63: TM-score 0.90, RMSD 1.20 Å
- 8DAT chain J against the predicted model P0CG63: TM-score 0.90, RMSD 1.10 Å
Elsewhere
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