UniProt P0C024
Peroxisomal coenzyme A diphosphatase NUDT7 (P0C024)
Peroxisomal coenzyme A diphosphatase NUDT7 (UniProt P0C024), EC 3.6.1.-: 70 experimental structures and 1 predicted model on GenesisL1, 37 ligands bound, 66 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P0C024
- Protein
- Peroxisomal coenzyme A diphosphatase NUDT7
- EC
- 3.6.1.-
- Experimental structures
- 70
- Predicted models
- 1
- Ligands
- 37
- Pockets
- 66 · 26 records with a druggable one
Structures
71 records of P0C024 in the MolNFT archive: 70 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5QGG | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H2G | 2 (best 0.62) |
| 5QGG | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H2G | — |
| 5QGH | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H2D | — |
| 5QGI | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | B0V | — |
| 5QGI | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | B0V | — |
| 5QGJ | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H1A | 2 (best 0.56) |
| 5QGJ | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H1A | — |
| 5QGK | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H0S | 2 (best 0.55) |
| 5QGK | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H0S | — |
| 5QGL | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H5A | 2 (best 0.55) |
| 5QGL | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H5A | — |
| 5QGM | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H4Y | — |
| 5QGN | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H4D | 2 (best 0.58) |
| 5QGN | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H4D | — |
| 5QGO | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H4A | 2 (best 0.57) |
| 5QGO | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H4A | — |
| 5QGP | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H3Y | 2 (best 0.42) |
| 5QGP | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H3Y | — |
| 5QGQ | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H3J | — |
| 5QGQ | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H3J | — |
| 5QGR | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H0J | — |
| 5QGR | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H0J | — |
| 5QGS | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H0D | 2 (best 0.53) |
| 5QGS | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H0D | — |
| 5QGT | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H04 | — |
| 5QGT | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H04 | — |
| 5QGU | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H3G | — |
| 5QGV | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H3A | 2 (best 0.54) |
| 5QGV | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H3A | — |
| 5QGW | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H2Y | 2 (best 0.52) |
| 5QGW | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H2Y | — |
| 5QGX | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H2J | 2 (best 0.50) |
| 5QGX | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H2J | — |
| 5QGY | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H1Y | 2 (best 0.54) |
| 5QGY | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H1Y | — |
| 5QGZ | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H1J | 2 (best 0.50) |
| 5QGZ | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H1J | — |
| 5QH0 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H0P | 2 (best 0.53) |
| 5QH0 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H0P | — |
| 5QH1 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H5G | 2 (best 0.53) |
| 5QH1 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H5G | — |
| 5QH2 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H54 | — |
| 5QH3 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H4G | 2 (best 0.54) |
| 5QH3 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H4G | — |
| 5QH4 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H47 | 2 (best 0.55) |
| 5QH4 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H47 | — |
| 5QH5 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H3V | 2 (best 0.53) |
| 5QH5 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H3V | — |
| 5QH6 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H0M | 2 (best 0.55) |
| 5QH6 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H0M | — |
| 5QH7 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H0G | — |
| 5QH8 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H0A | 2 (best 0.54) |
| 5QH8 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H0A | — |
| 5QH9 | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | GZY | 2 (best 0.50) |
| 5QH9 | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | GZY | — |
| 5QHA | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H3D | 2 (best 0.54) |
| 5QHA | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H3D | — |
| 5QHB | PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal… | x-ray diffraction | A | H31 | 2 (best 0.51) |
| 5QHB | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H31 | — |
| 5QHC | Pandda analysis group deposition of models with modelled events (E.G. bound ligands) -- crystal… | x-ray diffraction | A | H2M | — |
11 records more on the page itself.
Ligands
- B0V · 2-methoxy-~{N}-(2,4,6-trimethylphenyl)ethanamide · in 2 records
- GZY · 1-[(2S)-2-(3-methoxyphenyl)pyrrolidin-1-yl]ethan-1-one · in 2 records
- H04 · 1-(2-ethoxyphenyl)piperazine · in 2 records
- H0A · 1-[(2S)-2-(4-methoxyphenyl)-2,3,6,7-tetrahydro-1H-azepin-1-yl]ethan-1-one · in 2 records
- H0D · N-(4-chlorophenyl)-N'-[(2R)-1-hydroxybutan-2-yl]urea · in 2 records
- H0J · 5-(pyridin-2-yl)thiophene-2-carbothioamide · in 2 records
- H0M · 2-(3-hydroxyphenyl)-N-(pyridin-2-yl)acetamide · in 2 records
- H0P · 2-(3-hydroxyphenyl)-N-(pyridin-3-yl)acetamide · in 2 records
- H0S · N-(4-methylphenyl)-1H-pyrazolo[3,4-d]pyrimidin-4-amine · in 2 records
- H17 · 2-{3-[(2R)-1-acryloylpyrrolidin-2-yl]phenyl}-N-(3-chlorophenyl)acetamide · in 2 records
- H1A · 2-ethyl-N-(2-hydroxyphenyl)butanamide · in 2 records
- H1G · 2-(4-methoxyphenyl)-N-{5-[2-oxo-2-(3-oxopiperazin-1-yl)ethoxy]pyridin-3-yl}acetamide · in 2 records
- H1J · N-(3-chlorophenyl)-2-(4-fluorophenyl)acetamide · in 2 records
- H1P · 1-(4'-fluoro[1,1'-biphenyl]-2-yl)-1,3-dihydro-2H-pyrrol-2-one · in 2 records
- H1Y · N-(3-chlorophenyl)-2-phenylacetamide · in 2 records
- H2G · (2S)-1-{[(5-methylthiophen-2-yl)methyl]amino}propan-2-ol · in 2 records
- H2J · N-(3-chlorophenyl)-2-(4-methoxyphenyl)acetamide · in 2 records
- H2Y · 2-(4-methoxyphenyl)-N-(pyridin-3-yl)acetamide · in 2 records
- H31 · 1-(4'-methyl[1,1'-biphenyl]-2-yl)pyrrolidin-2-one · in 2 records
- H3A · N-(3-chlorophenyl)-2-(3-methoxyphenyl)acetamide · in 2 records
- H3D · N-[1-(2,3-dihydro-1,4-benzodioxin-6-yl) cyclopentyl]acetamide · in 2 records
- H3J · 3-methyl-2-[(pyridin-3-yl)oxy]cyclopenta-2,4-dien-1-one · in 2 records
- H3V · N-(1,2-oxazol-3-yl)-2-phenylacetamide · in 2 records
- H3Y · (3aR,4S,6R,7R,8aR)-6-phenyloctahydro-1H-3a,7-epiminocyclohepta[c]pyrrol-4-ol · in 2 records
- H47 · 2-(3-methoxyphenyl)-N-(1,2-oxazol-3-yl)acetamide · in 2 records
- H4A · (3aR,4R,6R,7R,8aR)-6-phenyloctahydro-1H-3a,7-epiminocyclohepta[c]pyrrol-4-ol · in 2 records
- H4D · 3-borono-5-{[(thiophen-2-yl)acetyl]amino}benzoic acid · in 2 records
- H4G · 2-(2,4-difluorophenyl)-N-(pyridin-3-yl)acetamide · in 2 records
- H5A · 3,4,5-trimethoxybenzoic acid · in 2 records
- H5D · 2-{3-[(2S)-1-acetylpyrrolidin-2-yl]phenyl}-N-(3-chlorophenyl)acetamide · in 2 records
Experiment against prediction
- 5T3P chain C against the predicted model P0C024: TM-score 0.99, RMSD 0.61 Å
- 5T3P chain C against the predicted model P0C024: TM-score 0.99, RMSD 0.61 Å
- 5T3P chain B against the predicted model P0C024: TM-score 0.99, RMSD 0.64 Å
- 5T3P chain B against the predicted model P0C024: TM-score 0.99, RMSD 0.64 Å
- 5T3P chain A against the predicted model P0C024: TM-score 0.98, RMSD 0.78 Å
- 5T3P chain A against the predicted model P0C024: TM-score 0.98, RMSD 0.78 Å
- 5QH9 chain A against the predicted model P0C024: TM-score 0.96, RMSD 1.39 Å
- 5QH9 chain A against the predicted model P0C024: TM-score 0.96, RMSD 1.39 Å
- 5QHA chain A against the predicted model P0C024: TM-score 0.96, RMSD 1.40 Å
- 5QHA chain A against the predicted model P0C024: TM-score 0.96, RMSD 1.40 Å
Elsewhere
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