UniProt P0ABV2
Biopolymer transport protein ExbD (P0ABV2)
Biopolymer transport protein ExbD (UniProt P0ABV2): 9 experimental structures and 1 predicted model on GenesisL1, 12 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- P0ABV2
- Protein
- Biopolymer transport protein ExbD
- Experimental structures
- 9
- Predicted models
- 1
- Pockets
- 12 · 2 records with a druggable one
Structures
10 records of P0ABV2 in the MolNFT archive: 9 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 2PFU | NMR structure determination of the periplasmic domain of ExbD from E.coli | solution nmr | A | — | — |
| 2PFU | NMR structure determination of the periplasmic domain of exbd from E.COLI | solution nmr | A | — | — |
| 5ZFU | Structure of the ExbB/ExbD hexameric complex (ExbB6ExbD3TM) | electron microscopy | G, H, I | — | 6 (best 0.85) |
| 5ZFU | Structure of the EXBB/EXBD hexameric complex (EXBB6EXBD3TM) | electron microscopy | G, H, I | — | — |
| 5ZFV | Structure of the ExbB/ExbD pentameric complex (ExbB5ExbD1TM) | electron microscopy | F | — | — |
| 5ZFV | Structure of the EXBB/EXBD pentameric complex (EXBB5EXBD1TM) | electron microscopy | F | — | — |
| 6TYI | ExbB-ExbD complex in MSP1E3D1 nanodisc | electron microscopy | Y, Z | — | 6 (best 0.67) |
| 6TYI | Exbb-exbd complex in MSP1E3D1 nanodisc | electron microscopy | Y, Z | — | — |
| 8P9R | Structure of the periplasmic domain of ExbD from E. coli in complex with TonB | x-ray diffraction | A, B | — | — |
| P0ABV2 | AlphaFold monomer V2.0 prediction for biopolymer transport protein exbd (P0ABV2) | predicted | A | — | — |
Experiment against prediction
- 8P9R chain B against the predicted model P0ABV2: TM-score 0.96, RMSD 0.66 Å
- 8P9R chain A against the predicted model P0ABV2: TM-score 0.95, RMSD 0.84 Å
- 2PFU chain A against the predicted model P0ABV2: TM-score 0.65, RMSD 1.80 Å
- 2PFU chain A against the predicted model P0ABV2: TM-score 0.65, RMSD 1.80 Å
- 6TYI chain Y against the predicted model P0ABV2: TM-score 0.60, RMSD 1.68 Å
- 6TYI chain Y against the predicted model P0ABV2: TM-score 0.60, RMSD 1.68 Å
- 5ZFU chain I against the predicted model P0ABV2: TM-score 0.53, RMSD 1.13 Å
- 5ZFU chain I against the predicted model P0ABV2: TM-score 0.53, RMSD 1.13 Å
- 5ZFU chain H against the predicted model P0ABV2: TM-score 0.53, RMSD 1.13 Å
- 5ZFU chain H against the predicted model P0ABV2: TM-score 0.53, RMSD 1.13 Å
Elsewhere
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