UniProt P0ABI8
Cytochrome bo(3) ubiquinol oxidase subunit 1 (P0ABI8)
Cytochrome bo(3) ubiquinol oxidase subunit 1 (UniProt P0ABI8), EC 7.1.1.3: 13 experimental structures and 1 predicted model on GenesisL1, 9 ligands bound, 112 pockets. Binding sites, druggability and experiment against prediction…
- UniProt
- P0ABI8
- Protein
- Cytochrome bo(3) ubiquinol oxidase subunit 1
- EC
- 7.1.1.3
- Experimental structures
- 13
- Predicted models
- 1
- Ligands
- 9
- Pockets
- 112 · 8 records with a druggable one
Structures
14 records of P0ABI8 in the MolNFT archive: 13 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 1FFT | The structure of ubiquinol oxidase from Escherichia coli | x-ray diffraction | A, F | — | — |
| 1FFT | The structure of ubiquinol oxidase from escherichia COLI | x-ray diffraction | A, F | — | — |
| 7CUB | 2.55-Angstrom Cryo-EM structure of Cytochrome bo3 from Escherichia coli in Native Membrane | electron microscopy | A | HEM, HEO, CU, 3PE, UQ8 | 16 (best 0.90) |
| 7CUB | 2.55-ångström cryo-EM structure of cytochrome BO3 from escherichia COLI in native membrane | electron microscopy | A | HEM, HEO, CU, 3PE, UQ8 | — |
| 7CUQ | 2.55-Angstrom Cryo-EM structure of Cytochrome bo3 from Escherichia coli in Native Membrane | electron microscopy | A | HEM, HEO, CU, 3PE, UQ8 | 15 (best 0.90) |
| 7CUQ | 2.55-ångström cryo-EM structure of cytochrome BO3 from escherichia COLI in native membrane | electron microscopy | A | HEM, HEO, CU, 3PE, UQ8 | — |
| 7CUW | Ubiquinol Binding Site of Cytochrome bo3 from Escherichia coli | electron microscopy | A | HEM, HEO, CU, 3PE, UQ8 | 16 (best 0.90) |
| 7CUW | Ubiquinol binding site of cytochrome BO3 from escherichia COLI | electron microscopy | A | HEM, HEO, CU, 3PE, UQ8 | — |
| 7XMC | Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO | electron microscopy | A | HEO, HEM, CU, PEE, UNX | 9 (best 0.90) |
| 7XMD | Cryo-EM structure of Cytochrome bo3 from Escherichia coli, the structure complexed with an… | electron microscopy | A | HEO, HEM, CU, PEE, JYR, UNX | 10 (best 0.90) |
| 8F68 | E. coli cytochrome bo3 ubiquinol oxidase monomer | electron microscopy | A | HEM, HEO, CU, 3PE | 10 (best 0.90) |
| 8F6C | E. coli cytochrome bo3 ubiquinol oxidase dimer | electron microscopy | A, E | HEM, HEO, CU, 3PE | 20 (best 0.91) |
| 8QQK | Cryo-EM structure of E. coli cytochrome bo3 quinol oxidase assembled in peptidiscs | electron microscopy | A | POV, 3PE, HEM, HEO, CU | 16 (best 0.91) |
| P0ABI8 | AlphaFold monomer V2.0 prediction for cytochrome BO(3) ubiquinol oxidase subunit 1 (P0ABI8) | predicted | A | — | — |
Ligands
- CU · Copper (II) ion · in 11 records
- HEM · Protoporphyrin IX containing Fe · in 11 records
- HEO · Heme O · in 11 records
- 3PE · 1,2-diacyl-sn-glycero-3-phosphoethanolamine · in 9 records
- UQ8 · Ubiquinone-8 · in 6 records
- PEE · 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine · in 2 records
- UNX · Unknown atom or ion · in 2 records
- JYR · methyl 3-oxidanyl-5-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-1-benzothiophene-2-carboxylate · in 1 record
- POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate · in 1 record
Experiment against prediction
- 7CUW chain A against the predicted model P0ABI8: TM-score 1.00, RMSD 0.59 Å
- 7CUW chain A against the predicted model P0ABI8: TM-score 1.00, RMSD 0.59 Å
- 8F68 chain A against the predicted model P0ABI8: TM-score 1.00, RMSD 0.60 Å
- 7CUB chain A against the predicted model P0ABI8: TM-score 1.00, RMSD 0.61 Å
- 7CUB chain A against the predicted model P0ABI8: TM-score 1.00, RMSD 0.61 Å
- 8F6C chain A against the predicted model P0ABI8: TM-score 1.00, RMSD 0.61 Å
- 8F6C chain E against the predicted model P0ABI8: TM-score 1.00, RMSD 0.61 Å
- 7XMD chain A against the predicted model P0ABI8: TM-score 0.99, RMSD 0.65 Å
- 7XMC chain A against the predicted model P0ABI8: TM-score 0.99, RMSD 0.67 Å
- 7CUQ chain A against the predicted model P0ABI8: TM-score 0.99, RMSD 0.69 Å
Elsewhere
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