UniProt P09890
Diaminopimelate decarboxylase (P09890)
Diaminopimelate decarboxylase (UniProt P09890), EC 4.1.1.20: 4 experimental structures and 1 predicted model on GenesisL1, 2 ligands bound, 21 pockets. Binding sites, druggability and experiment against prediction (TM-score) in…
- UniProt
- P09890
- Protein
- Diaminopimelate decarboxylase
- EC
- 4.1.1.20
- Experimental structures
- 4
- Predicted models
- 1
- Ligands
- 2
- Pockets
- 21 · 2 records with a druggable one
Structures
5 records of P09890 in the MolNFT archive: 4 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5X7M | Crystal structure of meso-diaminopimelate decarboxylase (DAPDC) from Corynebacterium glutamicum | x-ray diffraction | A, B | PLP | 10 (best 0.77) |
| 5X7M | Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum | x-ray diffraction | A, B | PLP | — |
| 5X7N | Crystal structure of meso-diaminopimelate decarboxylase (DAPDC) from Corynebacterium glutamicum | x-ray diffraction | A, B | PLP, LYS | 11 (best 0.77) |
| 5X7N | Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum | x-ray diffraction | A, B | PLP | — |
| P09890 | AlphaFold monomer V2.0 prediction for diaminopimelate decarboxylase (P09890) | predicted | A | — | — |
Ligands
Experiment against prediction
- 5X7N chain B against the predicted model P09890: TM-score 1.00, RMSD 0.47 Å
- 5X7N chain A against the predicted model P09890: TM-score 1.00, RMSD 0.48 Å
- 5X7M chain B against the predicted model P09890: TM-score 0.99, RMSD 0.60 Å
- 5X7M chain B against the predicted model P09890: TM-score 0.99, RMSD 0.60 Å
- 5X7M chain A against the predicted model P09890: TM-score 0.99, RMSD 0.61 Å
- 5X7M chain A against the predicted model P09890: TM-score 0.99, RMSD 0.61 Å
- 5X7N chain B against the predicted model P09890: TM-score 0.99, RMSD 0.47 Å
- 5X7N chain A against the predicted model P09890: TM-score 0.99, RMSD 0.48 Å
Elsewhere
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