UniProt P05630

ATP synthase subunit delta, mitochondrial (P05630)

ATP synthase subunit delta, mitochondrial (UniProt P05630): 52 experimental structures and 1 predicted model on GenesisL1, 17 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: P05630
Protein: ATP synthase subunit delta, mitochondrial
Experimental structures: 52
Predicted models: 1
Pockets: 17 · 8 records with a druggable one

Structures

53 records of P05630 in the MolNFT archive: 52 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
1E79	Bovine F1-ATPase inhibited by DCCD (dicyclohexylcarbodiimide)	x-ray diffraction	H	—	—
1E79	Bovine F1-ATPase inhibited by dccd (dicyclohexylcarbodiimide)	x-ray diffraction	H	—	—
1H8E	(ADP.AlF4)2(ADP.SO4) bovine F1-ATPase (all three catalytic sites occupied)	x-ray diffraction	H	—	—
1H8E	(ADP.ALF4)2(ADP.SO4) bovine F1-ATPase (all three catalytic sites occupied)	x-ray diffraction	H	—	—
2CK3	Azide inhibited bovine F1-ATPase	x-ray diffraction	H	—	—
2CK3	Azide inhibited bovine F1-ATPase	x-ray diffraction	H	—	—
2JDI	Ground state structure of F1-ATPase from bovine heart mitochondria (Bovine F1-ATPase crystallised…	x-ray diffraction	H	—	—
2JDI	Ground state structure of F1-ATPase from bovine heart mitochondria (bovine F1-ATPase crystallised…	x-ray diffraction	H	—	—
2V7Q	The structure of F1-ATPase inhibited by I1-60HIS, a monomeric form of the inhibitor protein, IF1.	x-ray diffraction	H	—	—
2V7Q	The structure of F1-ATPase inhibited by I1-60HIS, a monomeric form of the inhibitor protein, IF1.	x-ray diffraction	H	—	—
2W6H	Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration…	x-ray diffraction	H	—	—
2W6H	Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration…	x-ray diffraction	H	—	—
2W6I	Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration…	x-ray diffraction	H	—	—
2W6I	Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration…	x-ray diffraction	H	—	—
2W6J	Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration…	x-ray diffraction	H	—	—
2W6J	Low resolution structures of bovine mitochondrial F1-ATPase during controlled dehydration…	x-ray diffraction	H	—	—
2WSS	The structure of the membrane extrinsic region of bovine ATP synthase	x-ray diffraction	H, Q	—	—
2WSS	The structure of the membrane extrinsic region of bovine ATP synthase	x-ray diffraction	H, Q	—	—
2XND	Crystal structure of bovine F1-c8 sub-complex of ATP Synthase	x-ray diffraction	H	—	—
2XND	Crystal structure of bovine F1-C8 sub-complex of ATP synthase	x-ray diffraction	H	—	—
4ASU	F1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released…	x-ray diffraction	H	—	—
4ASU	F1-ATPase in which all three catalytic sites contain bound nucleotide, with magnesium ion released…	x-ray diffraction	H	—	—
4YXW	Bovine heart mitochondrial F1-ATPase inhibited by AMP-PNP and ADP in the presence of thiophosphate.	x-ray diffraction	H	—	—
4YXW	Bovine heart mitochondrial F1-ATPase inhibited by AMP-pnp and ADP in the presence of thiophosphate.	x-ray diffraction	H	—	—
5ARA	Bovine mitochondrial ATP synthase state 1a	electron microscopy	H	—	—
5ARA	Bovine mitochondrial ATP synthase state 1A	electron microscopy	H	—	—
5ARE	Bovine mitochondrial ATP synthase state 1b	electron microscopy	H	—	—
5ARE	Bovine mitochondrial ATP synthase state 1B	electron microscopy	H	—	—
5ARH	Bovine mitochondrial ATP synthase state 2a	electron microscopy	H	—	2 (best 0.70)
5ARH	Bovine mitochondrial ATP synthase state 2A	electron microscopy	H	—	—
5ARI	Bovine mitochondrial ATP synthase state 2b	electron microscopy	H	—	2 (best 0.72)
5ARI	Bovine mitochondrial ATP synthase state 2B	electron microscopy	H	—	—
5FIJ	Bovine mitochondrial ATP synthase state 2c	electron microscopy	H	—	—
5FIJ	Bovine mitochondrial ATP synthase state 2C	electron microscopy	H	—	—
5FIK	Bovine mitochondrial ATP synthase state 3a	electron microscopy	H	—	—
5FIK	Bovine mitochondrial ATP synthase state 3A	electron microscopy	H	—	—
5FIL	Bovine mitochondrial ATP synthase state 3b	electron microscopy	H	—	2 (best 0.71)
5FIL	Bovine mitochondrial ATP synthase state 3B	electron microscopy	H	—	—
6YY0	Bovine ATP synthase F1-peripheral stalk domain, state 1	electron microscopy	H	—	—
6Z1R	Bovine ATP synthase F1-peripheral stalk domain, state 2	electron microscopy	H	—	—
6Z1U	bovine ATP synthase F1c8-peripheral stalk domain, state 3	electron microscopy	H	—	1 (best 0.72)
6Z1U	Bovine ATP synthase F1C8-peripheral stalk domain, state 3	electron microscopy	H	—	—
6ZG7	bovine ATP synthase rotor domain, state 1	electron microscopy	H	—	6 (best 0.83)
6ZG7	Bovine ATP synthase rotor domain, state 1	electron microscopy	H	—	—
6ZG8	Bovine ATP synthase rotor domain state 2	electron microscopy	H	—	—
6ZIK	Bovine ATP synthase rotor domain, state 3	electron microscopy	H	—	—
6ZPO	Bovine ATP synthase monomer state 1 (combined)	electron microscopy	H	—	—
6ZQM	Bovine ATP synthase monomer state 2 (combined)	electron microscopy	H	—	—
6ZQN	bovine ATP synthase monomer state 3 (combined)	electron microscopy	H	—	1 (best 0.74)
6ZQN	Bovine ATP synthase monomer state 3 (combined)	electron microscopy	H	—	—
7AJG	bovine ATP synthase dimer state2:state3	electron microscopy	H, AH	—	2 (best 0.83)
7AJI	bovine ATP synthase dimer state3:state2	electron microscopy	H, AH	—	1 (best 0.82)
P05630	AlphaFold monomer V2.0 prediction for ATP synthase subunit delta, mitochondrial (P05630)	predicted	A	—	—

Experiment against prediction

6ZQN chain H against the predicted model P05630: TM-score 0.98, RMSD 0.57 Å
6ZQN chain H against the predicted model P05630: TM-score 0.98, RMSD 0.57 Å
7AJI chain H against the predicted model P05630: TM-score 0.98, RMSD 0.57 Å
7AJG chain AH against the predicted model P05630: TM-score 0.98, RMSD 0.57 Å
7AJG chain H against the predicted model P05630: TM-score 0.98, RMSD 0.59 Å
7AJI chain AH against the predicted model P05630: TM-score 0.98, RMSD 0.59 Å
6ZQM chain H against the predicted model P05630: TM-score 0.98, RMSD 0.59 Å
6ZPO chain H against the predicted model P05630: TM-score 0.98, RMSD 0.63 Å
6ZG8 chain H against the predicted model P05630: TM-score 0.98, RMSD 0.66 Å
6ZIK chain H against the predicted model P05630: TM-score 0.98, RMSD 0.65 Å

Elsewhere

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