UniProt D2YW40
Snaclec rhodocetin subunit delta (D2YW40)
Snaclec rhodocetin subunit delta (UniProt D2YW40): 21 experimental structures and 1 predicted model on GenesisL1, 3 ligands bound, 94 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- D2YW40
- Protein
- Snaclec rhodocetin subunit delta
- Experimental structures
- 21
- Predicted models
- 1
- Ligands
- 3
- Pockets
- 94 · 7 records with a druggable one
Structures
22 records of D2YW40 in the MolNFT archive: 21 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5THP | Rhodocetin in complex with the integrin ALPHA2-a domain | x-ray diffraction | B, E, H, K, N, Q | NA, SO4, CL | — |
| 6ND8 | Rhodocetin in complex with the integrin ALPHA2-a domain and barium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6ND8 | Rhodocetin in complex with the integrin ALPHA2-a domain and barium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6ND9 | Rhodocetin in complex with the integrin ALPHA2-a domain with calcium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6ND9 | Rhodocetin in complex with the integrin ALPHA2-a domain with calcium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDA | Rhodocetin in complex with the integrin ALPHA2-a domain and cadmium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | 13 (best 0.77) |
| 6NDA | Rhodocetin in complex with the integrin ALPHA2-a domain and cadmium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDB | Rhodocetin in complex with the integrin ALPHA2-a domain and cobalt | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | 13 (best 0.83) |
| 6NDB | Rhodocetin in complex with the integrin ALPHA2-a domain and cobalt | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDC | Rhodocetin in complex with the integrin ALPHA2-a domain with chromium bound | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | 14 (best 0.79) |
| 6NDC | Rhodocetin in complex with the integrin ALPHA2-a domain with chromium bound | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDD | Rhodocetin in complex with the integrin ALPHA2-a domain with manganese bound | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | 15 (best 0.77) |
| 6NDD | Rhodocetin in complex with the integrin ALPHA2-a domain with manganese bound | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDE | Rhodocetin in complex with the integrin ALPHA2-a domain with prasedymium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | 13 (best 0.75) |
| 6NDE | Rhodocetin in complex with the integrin ALPHA2-a domain with prasedymium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDF | Rhodocetin in complex with the integrin ALPHA2-a domain with strontium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | 13 (best 0.75) |
| 6NDF | Rhodocetin in complex with the integrin ALPHA2-a domain with strontium | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDG | Rhodocetin in complex with the integrin ALPHA2-a domain with yttrium bound | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | 13 (best 0.77) |
| 6NDG | Rhodocetin in complex with the integrin ALPHA2-a domain with yttrium bound | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDH | Rhodocetin in complex with the integrin ALPHA2-a domain and zinc | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| 6NDH | Rhodocetin in complex with the integrin ALPHA2-a domain and zinc | x-ray diffraction | B, E, H, K, N, Q | SO4, CL | — |
| D2YW40 | AlphaFold monomer V2.0 prediction for snaclec rhodocetin subunit delta (D2YW40) | predicted | A | — | — |
Ligands
Experiment against prediction
- 6NDA chain E against the predicted model D2YW40: TM-score 0.98, RMSD 0.53 Å
- 6NDA chain H against the predicted model D2YW40: TM-score 0.98, RMSD 0.53 Å
- 6NDD chain E against the predicted model D2YW40: TM-score 0.98, RMSD 0.53 Å
- 6NDD chain H against the predicted model D2YW40: TM-score 0.98, RMSD 0.53 Å
- 6NDA chain Q against the predicted model D2YW40: TM-score 0.98, RMSD 0.53 Å
- 6NDA chain N against the predicted model D2YW40: TM-score 0.98, RMSD 0.53 Å
- 6NDB chain H against the predicted model D2YW40: TM-score 0.98, RMSD 0.54 Å
- 6NDD chain N against the predicted model D2YW40: TM-score 0.98, RMSD 0.54 Å
- 6NDB chain E against the predicted model D2YW40: TM-score 0.98, RMSD 0.54 Å
- 6NDD chain Q against the predicted model D2YW40: TM-score 0.98, RMSD 0.54 Å
Elsewhere
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