UniProt D0VWR3
Photosystem II reaction center protein Ycf12 (D0VWR3)
Photosystem II reaction center protein Ycf12 (UniProt D0VWR3): 65 experimental structures and 1 predicted model on GenesisL1, 5 ligands bound, 70 pockets. Binding sites, druggability and experiment against prediction (TM-score)…
- UniProt
- D0VWR3
- Protein
- Photosystem II reaction center protein Ycf12
- Experimental structures
- 65
- Predicted models
- 1
- Ligands
- 5
- Pockets
- 70 · 36 records with a druggable one
Structures
66 records of D0VWR3 in the MolNFT archive: 65 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 3WU2 | Crystal structure analysis of Photosystem II complex | x-ray diffraction | Y, y | — | — |
| 3WU2 | Crystal structure analysis of photosystem II complex | x-ray diffraction | Y, y | — | — |
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | Y, y | — | — |
| 4UB6 | Native structure of photosystem II (dataset-1) by a femtosecond X-ray laser | x-ray diffraction | Y, y | — | — |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | Y, y | — | — |
| 4UB8 | Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser | x-ray diffraction | Y, y | — | — |
| 5B5E | Crystal structure analysis of photosystem II complex | x-ray diffraction | Y, y | — | — |
| 5B66 | Crystal structure analysis of photosystem II complex | x-ray diffraction | Y, y | — | — |
| 5GTH | Native XFEL structure of photosystem II (dark dataset) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 5GTH | Native xfel structure of photosystem II (dark dataset) | x-ray diffraction | Y, y | — | — |
| 5GTI | Native XFEL structure of photosystem II (two flash dataset) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 5GTI | Native xfel structure of photosystem II (two flash dataset) | x-ray diffraction | Y, y | — | — |
| 5V2C | Re-refinement of crystal structure of photosystem II complex | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 5V2C | Re-refinement of crystal structure of photosystem II complex | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 5WS5 | Native XFEL structure of photosystem II (preflash dark dataset) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 5WS5 | Native xfel structure of photosystem II (preflash dark dataset) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 5WS6 | Native XFEL structure of Photosystem II (preflash two-flash dataset | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 5WS6 | Native xfel structure of photosystem II (preflash two-flash dataset | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 6JLJ | XFEL structure of cyanobacterial photosystem II (dark state, dataset1) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 6JLJ | Xfel structure of cyanobacterial photosystem II (dark state, DATASET1) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 6JLK | XFEL structure of cyanobacterial photosystem II (1F state, dataset1) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 6JLK | Xfel structure of cyanobacterial photosystem II (1F state, DATASET1) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 6JLL | XFEL structure of cyanobacterial photosystem II (2F state, dataset1) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 6JLL | Xfel structure of cyanobacterial photosystem II (2F state, DATASET1) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 6JLM | XFEL structure of cyanobacterial photosystem II (dark state, dataset2) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 6JLM | Xfel structure of cyanobacterial photosystem II (dark state, DATASET2) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 6JLN | XFEL structure of cyanobacterial photosystem II (1F state, dataset2) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 6JLN | Xfel structure of cyanobacterial photosystem II (1F state, DATASET2) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 6JLO | XFEL structure of cyanobacterial photosystem II (2F state, dataset2) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 6JLO | Xfel structure of cyanobacterial photosystem II (2F state, DATASET2) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 6JLP | XFEL structure of cyanobacterial photosystem II (3F state, dataset2) | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 6JLP | Xfel structure of cyanobacterial photosystem II (3F state, DATASET2) | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 7CJI | Photosystem II structure in the S1 state | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 7CJI | Photosystem II structure in the S1 state | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 7CJJ | Photosystem II structure in the S2 state | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 7COU | Structure of cyanobacterial photosystem II in the dark S1 state | x-ray diffraction | Y, y | CLA, LMG, BCR | — |
| 7CZL | Structural insights into a dimeric Psb27-photosystem II complex from a cyanobacterium… | electron microscopy | Y, y | CLA, BCR | 2 (best 0.85) |
| 7CZL | Structural insights into a dimeric PSB27-photosystem II complex from a cyanobacterium… | electron microscopy | Y, y | CLA, BCR | — |
| 7D1T | Cryo-EM Structure of PSII at 1.95 angstrom resolution | electron microscopy | Y, y | CLA, LMG, UNL, BCR | — |
| 7D1T | Cryo-EM structure of psii at 1.95 ångström resolution | electron microscopy | Y, y | CLA, LMG, UNL, BCR | — |
| 7D1U | Cryo-EM Structure of PSII at 2.08 angstrom resolution | electron microscopy | Y, y | CLA, LMG, UNL, BCR | 2 (best 0.87) |
| 7D1U | Cryo-EM structure of psii at 2.08 ångström resolution | electron microscopy | Y, y | CLA, LMG, BCR | — |
| 7DXH | Cryo-EM structure of PSII intermediate Psb28-PSII complex | electron microscopy | y | — | 1 (best 0.83) |
| 7DXH | Cryo-EM structure of psii intermediate PSB28-psii complex | electron microscopy | y | — | — |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | Y | CLA, BCR | 1 (best 0.86) |
| 7EDA | Structure of monomeric photosystem II | electron microscopy | Y | CLA, BCR | — |
| 8GN0 | Crystal structure of DCBQ-bound photosystem II complex | x-ray diffraction | Y, y | CLA, LMG, UNL, MG, BCR | 2 (best 0.87) |
| 8GN1 | Crystal structure of DBBQ-bound photosystem II complex | x-ray diffraction | Y, y | CLA, LMG, UNL, BCR | 2 (best 0.87) |
| 8GN2 | Crystal structure of PPBQ-bound photosystem II complex | x-ray diffraction | Y, y | CLA, LMG, UNL, BCR | 2 (best 0.87) |
| 8IR5 | XFEL structure of cyanobacterial photosystem II under dark conditions | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IR6 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 20-nanosecond delay | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IR7 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-nanosecond delay | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IR8 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 1-microsecond delay | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IR9 | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 30-microsecond delay | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IRA | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 200-microsecond… | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IRB | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IRC | XFEL structure of cyanobacterial photosystem II following one flash (1F) with a 5-millisecond delay… | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
| 8IRD | XFEL structure of cyanobacterial photosystem II following two flashes (2F) with a 20-nanosecond… | x-ray diffraction | Y, y | CLA, LMG, BCR | 2 (best 0.87) |
6 records more on the page itself.
Ligands
Experiment against prediction
- 8IRG chain y against the predicted model D0VWR3: TM-score 0.81, RMSD 1.42 Å
- 8IR6 chain y against the predicted model D0VWR3: TM-score 0.81, RMSD 1.41 Å
- 8IRH chain y against the predicted model D0VWR3: TM-score 0.81, RMSD 1.42 Å
- 8IR8 chain y against the predicted model D0VWR3: TM-score 0.80, RMSD 1.41 Å
- 6JLJ chain y against the predicted model D0VWR3: TM-score 0.80, RMSD 1.39 Å
- 8GN1 chain Y against the predicted model D0VWR3: TM-score 0.80, RMSD 1.35 Å
- 5WS5 chain Y against the predicted model D0VWR3: TM-score 0.80, RMSD 1.38 Å
- 5WS5 chain Y against the predicted model D0VWR3: TM-score 0.80, RMSD 1.38 Å
- 6JLK chain y against the predicted model D0VWR3: TM-score 0.80, RMSD 1.39 Å
- 5WS6 chain y against the predicted model D0VWR3: TM-score 0.80, RMSD 1.42 Å
Elsewhere
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