UniProt D0LID6
Microcompartments protein (D0LID6)
Microcompartments protein (UniProt D0LID6): 10 experimental structures and 1 predicted model on GenesisL1, 76 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- D0LID6
- Protein
- Microcompartments protein
- Experimental structures
- 10
- Predicted models
- 1
- Pockets
- 76 · 8 records with a druggable one
Structures
11 records of D0LID6 in the MolNFT archive: 10 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5V74 | Structure of the intact Haliangium ochraceum microcompartment shell | x-ray diffraction | A8, A9, B8, B9, C8, C9, D8, D9, E8, E9, F8, F9, G8, G9, H8, H9, I8, I9, J8, J9, K8, K9, L8, L9, M8, M9, N8, N9, O8, O9, P8, P9, Q8, Q9, R8, R9, S8, S9, T8, T9, U8, U9, V8, V9, W8, W9, X8, X9, Y8, Y9, Z8, Z9, 18, 19, 28, 29, 38, 39, 48, 49 | — | 7 (best 0.81) |
| 5V75 | Structure of Haliangium ochraceum BMC-T HO-5816 | x-ray diffraction | A, B, C, D, E, F | — | 6 (best 0.77) |
| 5V75 | Structure of haliangium ochraceum bmc-T ho-5816 | x-ray diffraction | A, B, C, D, E, F | — | — |
| 6MZU | Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, closed state | electron microscopy | A, B, C, D, E, F | — | — |
| 6MZV | Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, widened inner ring | electron microscopy | A, B, C, D, E, F | — | 14 (best 0.79) |
| 6MZX | Cryo-EM structure of the HO BMC shell: Icosahedral reconstruction (main population) | electron microscopy | A8, A9 | — | 7 (best 0.78) |
| 6MZY | Cryo-EM structure of the HO BMC shell: Icosahedral reconstruction of the compacted subpopulation | electron microscopy | A8, A9 | — | 6 (best 0.78) |
| 6N07 | Structure of the HO BMC shell: BMC-TD focused map, open inner pore, compacted shell | electron microscopy | A, B, C, D, E, F | — | 12 (best 0.79) |
| 6N0F | Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TD-TSTSTS | electron microscopy | A, B, C, D, E, F | — | 12 (best 0.80) |
| 6N0G | Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TS-TDTDTD | electron microscopy | G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X | — | 12 (best 0.80) |
| D0LID6 | AlphaFold monomer V2.0 prediction for bacterial microcompartment protein trimer-2 (D0LID6) | predicted | A | — | — |
Experiment against prediction
- 5V75 chain E against the predicted model D0LID6: TM-score 0.99, RMSD 0.49 Å
- 5V75 chain E against the predicted model D0LID6: TM-score 0.99, RMSD 0.49 Å
- 5V75 chain D against the predicted model D0LID6: TM-score 0.99, RMSD 0.49 Å
- 5V75 chain D against the predicted model D0LID6: TM-score 0.99, RMSD 0.49 Å
- 5V75 chain F against the predicted model D0LID6: TM-score 0.99, RMSD 0.52 Å
- 5V75 chain F against the predicted model D0LID6: TM-score 0.99, RMSD 0.52 Å
- 6N07 chain B against the predicted model D0LID6: TM-score 0.99, RMSD 0.59 Å
- 6N07 chain C against the predicted model D0LID6: TM-score 0.99, RMSD 0.59 Å
- 6MZV chain A against the predicted model D0LID6: TM-score 0.99, RMSD 0.58 Å
- 6MZV chain B against the predicted model D0LID6: TM-score 0.99, RMSD 0.59 Å
Elsewhere
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