UniProt D0LID5

Microcompartments protein (D0LID5)

Microcompartments protein (UniProt D0LID5): 10 experimental structures and 1 predicted model on GenesisL1, 1 ligand bound, 67 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.

UniProt: D0LID5
Protein: Microcompartments protein
Experimental structures: 10
Predicted models: 1
Ligands: 1
Pockets: 67 · 4 records with a druggable one

Structures

11 records of D0LID5 in the MolNFT archive: 10 experimental, 1 predicted.

Entry	Title	Method	Chains	Ligands	Pockets
5DJB	Structure of the Haliangium ochraceum BMC-H shell protein	x-ray diffraction	A, B, C, D, E, F, G, H	—	—
5DJB	Structure of the haliangium ochraceum bmc-H shell protein	x-ray diffraction	A, B, C, D, E, F, G, H	—	—
5V74	Structure of the intact Haliangium ochraceum microcompartment shell	x-ray diffraction	A2, A3, A4, A5, A6, A7, B2, B3, B4, B5, B6, B7, C2, C3, C4, C5, C6, C7, D2, D3, D4, D5, D6, D7, E2, E3, E4, E5, E6, E7, F2, F3, F4, F5, F6, F7, G2, G3, G4, G5, G6, G7, H2, H3, H4, H5, H6, H7, I2, I3, I4, I5, I6, I7, J2, J3, J4, J5, J6, J7, K2, K3, K4, K5, K6, K7, L2, L3, L4, L5, L6, L7, M2, M3, M4, M5, M6, M7, N2, N3, N4, N5, N6, N7, O2, O3, O4, O5, O6, O7, P2, P3, P4, P5, P6, P7, Q2, Q3, Q4, Q5, Q6, Q7, R2, R3, R4, R5, R6, R7, S2, S3, S4, S5, S6, S7, T2, T3, T4, T5, T6, T7, U2, U3, U4, U5, U6, U7, V2, V3, V4, V5, V6, V7, W2, W3, W4, W5, W6, W7, X2, X3, X4, X5, X6, X7, Y2, Y3, Y4, Y5, Y6, Y7, Z2, Z3, Z4, Z5, Z6, Z7, 12, 13, 14, 15, 16, 17, 22, 23, 24, 25, 26, 27, 32, 33, 34, 35, 36, 37, 42, 43, 44, 45, 46, 47	—	15 (best 0.82)
6MZU	Cryo-EM structure of the HO BMC shell: BMC-TD focused structure, closed state	electron microscopy	GA, GB, GC, GD, GE, GF, HA, HB, HC, HD, HE, HF, IA, IB, IC, ID, IE, IF, JA, JB, JC, JD, JE, JF, KA, KB, KC, KD, KE, KF, LA, LB, LC, LD, LE, LF	—	—
6N07	Structure of the HO BMC shell: BMC-TD focused map, open inner pore, compacted shell	electron microscopy	GA, GB, GC, GD, GE, GF, HA, HB, HC, HD, HE, HF, IA, IB, IC, ID, IE, IF, JA, JB, JC, JD, JE, JF, KA, KB, KC, KD, KE, KF, LA, LB, LC, LD, LE, LF	—	18 (best 0.79)
6N0G	Cryo-EM structure of the HO BMC shell: subregion classified for BMC-T: TS-TDTDTD	electron microscopy	GA, GB, GC, GD, GE, GF, HA, HB, HC, HD, HE, HF, IA, IB, IC, ID, IE, IF, JA, JB, JC, JD, JE, JF, KA, KB, KC, KD, KE, KF, LA, LB, LC, LD, LE, LF	—	14 (best 0.81)
6NER	Synthetic Haliangium ochraceum BMC shell	x-ray diffraction	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d	SO4	20 (best 0.83)
6NER	Synthetic haliangium ochraceum bmc shell	x-ray diffraction	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d	SO4	—
6NLU	Circularly permuted Haliangium ochraceum BMC-H	x-ray diffraction	A, B	—	—
6NLU	Circularly permuted haliangium ochraceum bmc-H	x-ray diffraction	A, B	—	—
D0LID5	AlphaFold monomer V2.0 prediction for bacterial microcompartment protein homohexamer (D0LID5)	predicted	A	—	—

Ligands

SO4 · Sulfate ion · in 2 records

Experiment against prediction

6MZU chain HE against the predicted model D0LID5: TM-score 0.98, RMSD 0.51 Å
6MZU chain LE against the predicted model D0LID5: TM-score 0.98, RMSD 0.52 Å
6N0G chain GC against the predicted model D0LID5: TM-score 0.98, RMSD 0.53 Å
6MZU chain JE against the predicted model D0LID5: TM-score 0.98, RMSD 0.53 Å
6MZU chain ID against the predicted model D0LID5: TM-score 0.98, RMSD 0.54 Å
5DJB chain H against the predicted model D0LID5: TM-score 0.98, RMSD 0.54 Å
5DJB chain H against the predicted model D0LID5: TM-score 0.98, RMSD 0.54 Å
6MZU chain GA against the predicted model D0LID5: TM-score 0.98, RMSD 0.54 Å
6N0G chain KC against the predicted model D0LID5: TM-score 0.98, RMSD 0.55 Å
6MZU chain HC against the predicted model D0LID5: TM-score 0.98, RMSD 0.55 Å

Elsewhere

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