UniProt B4RMG0
Nucleoside diphosphate kinase (B4RMG0)
Nucleoside diphosphate kinase (UniProt B4RMG0), EC 2.7.4.6: 2 experimental structures and 1 predicted model on GenesisL1, 21 pockets. Binding sites, druggability and experiment against prediction (TM-score) in GL1X.
- UniProt
- B4RMG0
- Protein
- Nucleoside diphosphate kinase
- EC
- 2.7.4.6
- Experimental structures
- 2
- Predicted models
- 1
- Pockets
- 21 · 1 record with a druggable one
Structures
3 records of B4RMG0 in the MolNFT archive: 2 experimental, 1 predicted.
| Entry | Title | Method | Chains | Ligands | Pockets |
|---|---|---|---|---|---|
| 5V6D | Crystal structure of nucleoside diphosphate kinase from Neisseria gonorrhoeae in complex with… | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P | — | 20 (best 0.85) |
| 5V6D | Crystal structure of nucleoside diphosphate kinase from neisseria gonorrhoeae in complex with… | x-ray diffraction | A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P | — | — |
| B4RMG0 | AlphaFold monomer V2.0 prediction for nucleoside diphosphate kinase (B4RMG0) | predicted | A | — | 1 (best 0.47) |
Experiment against prediction
- 5V6D chain A against the predicted model B4RMG0: TM-score 0.99, RMSD 0.36 Å
- 5V6D chain A against the predicted model B4RMG0: TM-score 0.99, RMSD 0.36 Å
- 5V6D chain I against the predicted model B4RMG0: TM-score 0.99, RMSD 0.40 Å
- 5V6D chain N against the predicted model B4RMG0: TM-score 0.99, RMSD 0.42 Å
- 5V6D chain O against the predicted model B4RMG0: TM-score 0.99, RMSD 0.42 Å
- 5V6D chain H against the predicted model B4RMG0: TM-score 0.99, RMSD 0.43 Å
- 5V6D chain C against the predicted model B4RMG0: TM-score 0.99, RMSD 0.42 Å
- 5V6D chain C against the predicted model B4RMG0: TM-score 0.99, RMSD 0.42 Å
- 5V6D chain G against the predicted model B4RMG0: TM-score 0.99, RMSD 0.44 Å
- 5V6D chain P against the predicted model B4RMG0: TM-score 0.99, RMSD 0.44 Å
Elsewhere
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