GL1X · GenesisL1 explorer

Ligand · ZOD

ZOD · [(2R,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] ethanoate

ZOD, [(2R,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] ethanoate (C17 H25 N5 O15 P2, 601.4 g/mol), in the…

Component
ZOD
Formula
C17 H25 N5 O15 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

ZOD in 2 structures; the first of them:

  • 5CB5 · Structural Insights into the Mechanism of Escherichia coli Ymdb · ZOD F201 · binds GLY10, ASP11, ILE12, ALA23, ALA24, ALA25, GLY30, GLY31 and 15 more
  • 5CB5 · Structural insights into the mechanism of escherichia COLI ymdb · ZOD F201 · binds GLY10, ASP11, ILE12, ALA23, ALA24, ALA25, GLY30, GLY31 and 15 more

Residues it binds most

ALA 4, GLY 4, VAL 4, ILE 4, TYR 4, ASP 4, PRO 4, SER 4, THR 4 (residue and the binding sites it lines).

Found with

  • APR · Adenosine-5-diphosphoribose
  • SO4 · Sulfate ion
  • ACT · Acetate ion

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