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Ligand · ZM3

ZM3 · Mycinamicin III

ZM3, Mycinamicin III (C36 H59 N O11, 681.9 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
ZM3
Formula
C36 H59 N O11
Class
ligand
Structures
4
PDB entries
4

Binding sites

ZM3 in 4 structures; the first of them:

  • 2Y5Z · Mixed-function P450 MycG in complex with mycinamicin III in C2221 space group · ZM3 A460 · binds ARG75, GLU77, VAL79, PHE168, SER170, ALA172, VAL174, THR175 and 8 more
  • 2YCA · Mixed-function P450 MycG in complex with mycinamicin III in P21212 space group · ZM3 A460 · binds VAL79, GLY81, GLY82, LEU83, LEU84, TYR187, ASP226, GLY230 and 11 more
  • 4X7U · MycF mycinamicin III 3'-O-methyltransferase in complex with Mg, SAH and mycinamicin III… · ZM3 A303 · binds ALA30, GLY31, LEU32, TYR49, MET56, ARG61, PHE118, GLU131 and 12 more
  • 4X7Z · MycF mycinamicin III 3'-O-methyltransferase (E35Q, M56A, E139A variant) in complex with… · ZM3 A305 · binds ALA30, GLY31, LEU32, TYR49, ARG61, PHE118, MET132, LEU134 and 11 more

Residues it binds most

LEU 8, ASP 5, VAL 8, ALA 8, PHE 8, MET 7, TYR 5, GLU 5, GLY 5, ARG 7 (residue and the binding sites it lines).

Found with

  • HEM · Protoporphyrin IX containing Fe
  • SAH · S-adenosyl-L-homocysteine
  • MG · Magnesium ion
  • GOL · Glycerol
  • BEN · Benzamidine
  • DMS · Dimethyl sulfoxide
  • SIN · Succinic acid

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