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Ligand · ZKM

ZKM · N-[(1S,2R,3E)-2-hydroxy-1-{[(3-O-sulfo-beta-D-galactopyranosyl)oxy]methyl}heptadec-3-en-1-yl]-hexadecanamide

ZKM, N-[(1S,2R,3E)-2-hydroxy-1-{[(3-O-sulfo-beta-D-galactopyranosyl)oxy]methyl}heptadec-3-en-1-yl]-hexadecanamide (C40 H77 N O11 S, 780.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site…

Component
ZKM
Formula
C40 H77 N O11 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

ZKM in 2 structures; the first of them:

  • 7MLM · Crystal structure of mouse TLR4/MD-2 in complex with sulfatides · ZKM A703 · binds ARG337, MET358, LYS360, ARG380, LEU78, ILE80, VAL82, LEU87 and 9 more
  • 7MLM · Crystal structure of mouse TLR4/MD-2 in complex with sulfatides · ZKM A703 · binds ARG337, MET358, ARG380, LEU78, ILE80, VAL82, LEU87, ARG90 and 5 more

Residues it binds most

PHE 6, ILE 6, LEU 6, SER 4, VAL 6, ARG 2, GLU 5, PRO 4, TYR 4, CYS 3 (residue and the binding sites it lines).

Found with

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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