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Ligand · ZD1

ZD1 · (1R,4S,5S,6R)-4-amino-5,6-dihydroxy-2-(hydroxymethyl) cyclohex-2-en-1-yl alpha-D-glucopyranoside

ZD1, (1R,4S,5S,6R)-4-amino-5,6-dihydroxy-2-(hydroxymethyl) cyclohex-2-en-1-yl alpha-D-glucopyranoside (C13 H23 N O9, 337.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
ZD1
Formula
C13 H23 N O9
Class
ligand
Structures
2
PDB entries
1

Binding sites

ZD1 in 2 structures; the first of them:

  • 7MGY · Sco GlgEI-V279S in complex with 4-alpha-glucoside of valienamine · ZD1 A701 · binds LYS264, ASN268, SER279, TRP281, ALA282, GLN324, LYS356, TYR357 and 10 more
  • 7MGY · Sco glgei-V279S in complex with 4-alpha-glucoside of valienamine · ZD1 A701 · binds LYS264, ASN268, SER279, TRP281, ALA282, GLN324, LYS356, TYR357 and 10 more

Residues it binds most

ASP 4, LYS 4, ASN 4, TYR 4, GLN 4, ALA 4, ARG 4, GLU 4, ILE 4, SER 4 (residue and the binding sites it lines).

Found with

  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol

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