Ligand · Z4R

Z4R · methyl 3-thio-alpha-D-mannopyranoside

Z4R, methyl 3-thio-alpha-D-mannopyranoside (C7 H14 O5 S, 210.2 g/mol), in the MolNFT structures on GenesisL1: bound in 4 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands…

Component: Z4R
Formula: C7 H14 O5 S
Class: sugar
Structures: 4
PDB entries: 2

Binding sites

Z4R in 4 structures; the first of them:

3BVT · GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl… · Z4R B1 · binds TRP95, ARG228, TYR267, SER268, TYR269, ASP270, ASP341, GLU875 and 2 more
3BVU · GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with… · Z4R B1 · binds TRP95, TYR269, ASP340, ASP341, ARG876, GLY877
3BVT · Golgi mannosidase II D204A catalytic nucleophile mutant complex with methyl… · Z4R B1 · binds TRP95, ARG228, TYR267, SER268, TYR269, ASP270, ASP341, GLU875 and 2 more
3BVU · Golgi mannosidase II D204A catalytic nucleophile mutant complex with… · Z4R B1 · binds TRP95, TYR269, ASP340, ASP341, ARG876, GLY877

Residues it binds most

ASP 4, ARG 4, TYR 4, GLY 4, TRP 4, GLU 2, SER 2 (residue and the binding sites it lines).

Found with

ZN · Zinc ion
MAN · alpha-D-mannopyranose
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
PO4 · Phosphate ion
MRD · (4R)-2-methylpentane-2,4-diol
MPD · (4S)-2-methyl-2,4-pentanediol

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