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Ligand · Z3D

Z3D · (1R,2R,3S,4S,6R)-4-amino-2,3-dihydroxy-6-(hydroxymethyl)cyclohexyl alpha-D-glucopyranoside

Z3D, (1R,2R,3S,4S,6R)-4-amino-2,3-dihydroxy-6-(hydroxymethyl)cyclohexyl alpha-D-glucopyranoside (C13 H25 N O9, 339.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
Z3D
Formula
C13 H25 N O9
Class
ligand
Structures
2
PDB entries
1

Binding sites

Z3D in 2 structures; the first of them:

  • 7MEL · Sco GlgEI-V279S in complex with 4-alpha-glucoside of validamine · Z3D A701 · binds LYS264, ASN268, SER279, TRP281, ALA282, GLN324, TYR357, ASP359 and 8 more
  • 7MEL · Sco glgei-V279S in complex with 4-alpha-glucoside of validamine · Z3D A701 · binds LYS264, ASN268, SER279, TRP281, ALA282, GLN324, TYR357, ASP359 and 8 more

Residues it binds most

ASP 4, ASN 4, LYS 4, TYR 4, ALA 4, ARG 4, GLN 4, GLU 4, ILE 4, SER 4 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • EDO · 1,2-ethanediol
  • PEG · Di(hydroxyethyl)ether
  • PGE · Triethylene glycol

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