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Ligand · YZ0

YZ0 · methyl beta-D-mannopyranoside

YZ0, methyl beta-D-mannopyranoside (C7 H14 O6, 194.2 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…

Component
YZ0
Formula
C7 H14 O6
Class
sugar
Structures
6
PDB entries
3

Binding sites

YZ0 in 6 structures; the first of them:

  • 3BVV · Golgi mannosidase II D204A catalytic nucleophile mutant complex with METHYL… · YZ0 B1 · binds TRP95, TYR269, ASP341, ARG876, GLY877
  • 3BVW · GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl… · YZ0 B1 · binds TYR267, GLU875
  • 3BVX · GOLGI MANNOSIDASE II D204A catalytic nucleophile mutant complex with Methyl… · YZ0 B1 · binds TYR267, GLU875, ARG876
  • 3BVV · Golgi mannosidase II D204A catalytic nucleophile mutant complex with methyl… · YZ0 B1 · binds TRP95, TYR269, ASP341, ARG876, GLY877
  • 3BVW · Golgi mannosidase II D204A catalytic nucleophile mutant complex with methyl… · YZ0 B1 · binds TYR267, GLU875
  • 3BVX · Golgi mannosidase II D204A catalytic nucleophile mutant complex with methyl… · YZ0 B1 · binds TYR267, GLU875, ARG876

Residues it binds most

TYR 6, ARG 4, GLU 4, ASP 2, GLY 2, TRP 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • MAN · alpha-D-mannopyranose
  • MPD · (4S)-2-methyl-2,4-pentanediol
  • Z4Y · 6-thio-alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion
  • MRD · (4R)-2-methylpentane-2,4-diol

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