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Ligand · YVP

YVP · N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-[(3S)-6-carbamimidamido-2-oxohexan-3-yl]-L-phenylalaninamide

YVP, N-{3-[(prop-2-yn-1-yl)oxy]propanoyl}-D-phenylalanyl-N-[(3S)-6-carbamimidamido-2-oxohexan-3-yl]-L-phenylalaninamide (C31 H40 N6 O5, 576.7 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry). Every binding…

Component
YVP
Formula
C31 H40 N6 O5
Class
ligand
Structures
1
PDB entries
1

Binding sites

YVP in 1 structure; the first of them:

  • 7MAU · SARS-CoV-2 Main Protease (Mpro) in Complex with Covalent Inhibitor dFFR-yne · YVP A403 · binds THR25, THR26, HIS41, MET49, ASN142, GLY143, SER144, CYS145 and 11 more

Residues it binds most

THR 2, HIS 2, MET 2, GLN 2, ARG 2, ASN 2, ASP 2, CYS 2, GLU 2, GLY 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • DIO · 1,4-diethylene dioxide

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