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Ligand · YTB

YTB · (1R,2R,3S,4R,5R)-5-aminocyclopentane-1,2,3,4-tetrol

YTB, (1R,2R,3S,4R,5R)-5-aminocyclopentane-1,2,3,4-tetrol (C5 H11 N O4, 149.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
YTB
Formula
C5 H11 N O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

YTB in 2 structures; the first of them:

  • 3DX3 · Golgi alpha-Mannosidase II in complex with Mannostatin analog… · YTB A1050 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, TYR269, ASP341 and 6 more
  • 3DX3 · Golgi alpha-mannosidase II in complex with mannostatin analog (1R,2R… · YTB A1050 · binds HIS90, ASP92, TRP95, ASP204, PHE206, ARG228, TYR269, ASP341 and 6 more

Residues it binds most

ASP 2, ARG 2, HIS 2, TRP 2, TYR 2, PHE 2, THR 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • PO4 · Phosphate ion
  • MRD · (4R)-2-methylpentane-2,4-diol

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