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Ligand · YRO

YRO · 5-(3,3-dimethylbutyl)-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid

YRO, 5-(3,3-dimethylbutyl)-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid (C11 H16 N2 O4, 240.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
YRO
Formula
C11 H16 N2 O4
Class
ligand
Structures
2
PDB entries
1

Binding sites

YRO in 2 structures; the first of them:

  • 3W1Q · Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with NL-2 · YRO A403 · binds LYS43, ASN67, SER68, MET69, GLY70, LEU71, PRO72, SER99 and 7 more
  • 3W1Q · Structure of trypanosoma cruzi dihydroorotate dehydrogenase in complex with nl-2 · YRO A403 · binds LYS43, ASN67, SER68, MET69, GLY70, LEU71, PRO72, SER99 and 7 more

Residues it binds most

SER 4, ASN 4, PRO 4, CYS 4, GLY 4, LEU 4, LYS 4, MET 4, GLN 2 (residue and the binding sites it lines).

Found with

  • FMN · Flavin mononucleotide
  • NCO · Cobalt hexammine(iii)
  • GOL · Glycerol

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