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Ligand · YPS

YPS · (1R,3S,5R,7R)-N-[(1r,4R)-4-aminocyclohexyl]-3-(ethoxymethyl)-5-phenyladamantane-1-carboxamide

YPS, (1R,3S,5R,7R)-N-[(1r,4R)-4-aminocyclohexyl]-3-(ethoxymethyl)-5-phenyladamantane-1-carboxamide (C26 H38 N2 O2, 410.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
YPS
Formula
C26 H38 N2 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

YPS in 2 structures; the first of them:

  • 7M2D · Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound… · YPS A605 · binds ILE38, ARG64, VAL66, GLY67, LEU68, ALA101, GLY102, GLU103 and 11 more
  • 7M2D · Crystal structure of ebola zaire envelope glycoprotein gp in complex with compound… · YPS A605 · binds ARG64, VAL66, GLY67, ALA101, GLY102, LEU186, LEU515, TYR517 and 4 more

Residues it binds most

LEU 2, GLY 2, THR 2, ALA 2, ARG 2, ILE 1, MET 2, TYR 2, VAL 2, GLN 1 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose

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