Ligand · YPP
YPP · Hydrolyzed piperacillin
YPP, Hydrolyzed piperacillin (C23 H29 N5 O8 S, 535.6 g/mol), in the MolNFT structures on GenesisL1: bound in 5 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found…
- Component
- YPP
- Formula
- C23 H29 N5 O8 S
- Class
- ligand
- Structures
- 5
- PDB entries
- 3
Binding sites
YPP in 5 structures; the first of them:
- 3Q07 · CTX-M-9 S70G in complex with piperacillin · YPP B402 · binds THR52, ALA53, ASP54, ASN55
- 3Q1F · CTX-M-9 S70G in complex with hydrolyzed piperacillin · YPP A301 · binds CYS69, GLY70, LYS73, ASN104, TYR105, SER130, ASN132, GLU166 and 8 more
- 7O4A · Crystal structure of Penicillin-Binding Protein 1 (PBP1) from Staphylococcus aureus in… · YPP AAA801 · binds GLY313, SER314, LYS317, ILE348, TRP351, ARG353, TYR367, SER368 and 12 more
- 3Q07 · Ctx-M-9 S70G in complex with piperacillin · YPP B402 · binds THR52, ALA53, ASP54, ASN55
- 3Q1F · Ctx-M-9 S70G in complex with hydrolyzed piperacillin · YPP A301 · binds CYS69, GLY70, LYS73, ASN104, TYR105, SER130, ASN132, GLU166 and 8 more
Residues it binds most
GLY 10, THR 10, ASN 8, ALA 8, LYS 10, SER 6, TYR 6, ASP 6, GLN 4, PRO 6 (residue and the binding sites it lines).
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