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Ligand · YPM

YPM · (1s,3R,5S,7s)-N-[(1r,4r)-4-aminocyclohexyl]-3,5-diphenyladamantane-1-carboxamide

YPM, (1s,3R,5S,7s)-N-[(1r,4r)-4-aminocyclohexyl]-3,5-diphenyladamantane-1-carboxamide (C29 H36 N2 O, 428.6 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å…

Component
YPM
Formula
C29 H36 N2 O
Class
ligand
Structures
2
PDB entries
1

Binding sites

YPM in 2 structures; the first of them:

  • 7LYY · Crystal Structure of Ebola zaire Envelope glycoprotein GP in complex with compound… · YPM B701 · binds ILE38, ARG64, VAL66, GLY67, LEU68, ALA101, GLY102, LEU184 and 9 more
  • 7LYY · Crystal structure of ebola zaire envelope glycoprotein gp in complex with compound… · YPM B701 · binds ILE38, ARG64, VAL66, GLY67, LEU68, ALA101, GLY102, LEU184 and 6 more

Residues it binds most

LEU 2, GLY 2, THR 2, ALA 2, ARG 2, ILE 2, MET 2, TYR 2, VAL 2, PRO 1 (residue and the binding sites it lines).

Found with

  • BMA · beta-D-mannopyranose
  • MAN · alpha-D-mannopyranose
  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose
  • EDO · 1,2-ethanediol

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