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Ligand · YMP

YMP · O-(adenosine-5'-O-yl)-N-(L-tyrosyl)phosphoramidate

YMP, O-(adenosine-5'-O-yl)-N-(L-tyrosyl)phosphoramidate (C19 H24 N7 O8 P, 509.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
YMP
Formula
C19 H24 N7 O8 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

YMP in 2 structures; the first of them:

  • 2DLC · Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase · YMP X601 · binds TYR43, TRP44, GLY45, THR46, ALA47, HIS53, GLY55, TYR56 and 18 more
  • 2DLC · Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase · YMP X601 · binds TYR43, TRP44, GLY45, THR46, ALA47, HIS53, GLY55, TYR56 and 18 more

Residues it binds most

GLY 2, GLN 2, TYR 2, VAL 2, ALA 2, ASP 2, HIS 2, PRO 2, ASN 2, LEU 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion

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