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Ligand · YML

YML · [(3R,4S,5S,7R)-4,8-dihydroxy-3,5,7-trimethyl-2-oxooctyl]phosphonic acid

YML, [(3R,4S,5S,7R)-4,8-dihydroxy-3,5,7-trimethyl-2-oxooctyl]phosphonic acid (C11 H23 O5 P, 266.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
YML
Formula
C11 H23 O5 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

YML in 2 structures; the first of them:

  • 2HFJ · Pikromycin thioesterase with covalent pentaketide affinity label · YML A448 · binds TYR25, LEU29, THR77, ALA78, SER148, GLY149, TYR178, GLN183 and 6 more
  • 2HFJ · Pikromycin thioesterase with covalent pentaketide affinity label · YML A448 · binds TYR25, LEU29, THR77, ALA78, SER148, GLY149, TYR178, GLN183 and 6 more

Residues it binds most

LEU 2, ALA 2, TYR 2, GLN 2, GLY 2, HIS 2, ILE 2, MET 2, SER 2, THR 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • SO4 · Sulfate ion
  • DMS · Dimethyl sulfoxide

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