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Ligand · YLD

YLD · (1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl) amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid

YLD, (1R,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl) amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid (C21 H30 F N3 O8 S, 503.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1…

Component
YLD
Formula
C21 H30 F N3 O8 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

YLD in 2 structures; the first of them:

  • 7M03 · Structure of SARS-CoV-2 3CL protease in complex with inhibitor 18c · YLD A401 · binds LEU27, HIS41, MET49, TYR54, PHE140, LEU141, ASN142, GLY143 and 13 more
  • 7M03 · Structure of SARS-cov-2 3CL protease in complex with inhibitor 18C · YLD A401 · binds LEU27, HIS41, MET49, TYR54, PHE140, LEU141, ASN142, GLY143 and 13 more

Residues it binds most

HIS 4, LEU 4, MET 4, ARG 4, ASN 4, ASP 4, CYS 4, GLN 4, GLU 4, PHE 4 (residue and the binding sites it lines).

Found with

  • YLJ · (1S,2S)-2-((S)-2-((((3-fluorobenzyl)oxy)carbonyl) amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid

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