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Ligand · YLB

YLB · 5'-O-({[(2R)-2-amino-6-(butanoylamino)hexanoyl]oxy}phosphinato)adenosine

YLB, 5'-O-({[(2R)-2-amino-6-(butanoylamino)hexanoyl]oxy}phosphinato)adenosine (C20 H32 N7 O9 P, 545.5 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
YLB
Formula
C20 H32 N7 O9 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

YLB in 2 structures; the first of them:

  • 4CH3 · Structure of pyrrolysyl-tRNA synthetase in complex with adenylated butyryl lysine · YLB A500 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 20 more
  • 4CH3 · Structure of pyrrolysyl-tRNA synthetase in complex with adenylated butyryl lysine · YLB A500 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 20 more

Residues it binds most

LEU 2, GLU 2, GLY 2, PHE 2, ALA 2, ARG 2, MET 2, SER 2, ASN 2, CYS 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • EDO · 1,2-ethanediol

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