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Ligand · YLA

YLA · (S)-2-amino-6-(((prop-2-yn-1-yloxy)carbonyl)amino)hexanoic (((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric)anhydride

YLA, (S)-2-amino-6-(((prop-2-yn-1-yloxy)carbonyl)amino)hexanoic (((2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl)methyl phosphoric)anhydride (C20 H28 N7 O10 P, 557.5 g/mol), in the MolNFT structures on GenesisL1…

Component
YLA
Formula
C20 H28 N7 O10 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

YLA in 2 structures; the first of them:

  • 4CH6 · Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propargyloxycarbonyl… · YLA A500 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 19 more
  • 4CH6 · Structure of pyrrolysyl-tRNA synthetase in complex with adenylated propargyloxycarbonyl… · YLA A500 · binds MET300, ALA302, LEU305, TYR306, LEU309, ARG330, GLU332, GLU337 and 19 more

Residues it binds most

LEU 2, GLU 2, GLY 2, ALA 2, ARG 2, MET 2, PHE 2, SER 2, ASN 2, CYS 2 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • EDO · 1,2-ethanediol

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