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Ligand · YKG

YKG · [(5-bromo-7-methyl-2-oxo-2H-1-benzopyran-4-yl) methyl]phosphonic acid

YKG, [(5-bromo-7-methyl-2-oxo-2H-1-benzopyran-4-yl) methyl]phosphonic acid (C11 H10 Br O5 P, 333.1 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
YKG
Formula
C11 H10 Br O5 P
Class
ligand
Structures
3
PDB entries
2

Binding sites

YKG in 3 structures; the first of them:

  • 6D1G · Crystal structure of NDM-1 complexed with compound 9 · YKG A303 · binds MET67, PHE70, VAL73, TRP93, HIS120, HIS122, ASP124, HIS189 and 3 more
  • 6D19 · Crystal structure of kpc-2 complexed with compound 9 · YKG A301 · binds SER70, LYS73, TRP105, SER130, ARG220, LYS234, THR235, GLY236 and 1 more
  • 6D1G · Crystal structure of ndm-1 complexed with compound 9 · YKG A303 · binds MET67, PHE70, VAL73, TRP93, HIS120, HIS122, ASP124, HIS189 and 3 more

Residues it binds most

HIS 2, TRP 4, ASN 3, PHE 3, SER 2, ALA 1, ARG 2, ASP 2, CYS 2, GLY 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • ACT · Acetate ion
  • GOL · Glycerol

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