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Ligand · YJ0

YJ0 · (2R)-2-{[(4-O-hexopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-4-{[(25R)-5beta,14beta,17beta-spirostan-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside

YJ0, (2R)-2-{[(4-O-hexopyranosyl-beta-D-glucopyranosyl)oxy]methyl}-4-{[(25R)-5beta,14beta,17beta-spirostan-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside (C56 H92 O25, 1165.3 g/mol), in the MolNFT structures on…

Component
YJ0
Formula
C56 H92 O25
Class
ligand
Structures
2
PDB entries
2

Binding sites

YJ0 in 2 structures; the first of them:

  • 8T1B · Cryo-EM structure of full-length human TRPV4 in apo state · YJ0 A1210 · binds LEU622, PHE666, SER667, LEU670
  • 8T1E · Closed-state cryo-EM structure of full-length human TRPV4 in the presence of 4a-PDD · YJ0 A1207 · binds LEU622, PHE666, SER667, LEU670

Residues it binds most

LEU 16, SER 12, VAL 8, ILE 8, MET 8, PHE 11, PRO 8, GLU 4, LYS 4, THR 4 (residue and the binding sites it lines).

Found with

  • 9ZR · [(2~{R})-2-[(~{Z})-hexadec-9-enoyl]oxy-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (~{Z})-docos-13-enoate
  • NA · Sodium ion

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