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Ligand · YHK

YHK · 5'-O-[(R)-(cyclopropyloxy)(hydroxy)phosphoryl]adenosine

YHK, 5'-O-[(R)-(cyclopropyloxy)(hydroxy)phosphoryl]adenosine (C13 H18 N5 O7 P, 387.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
YHK
Formula
C13 H18 N5 O7 P
Class
ligand
Structures
2
PDB entries
2

Binding sites

YHK in 2 structures; the first of them:

  • 8G0T · Crystal Structure of Acetyl-CoA synthetase in complex with a cyclopropyl ester AMP… · YHK A803 · binds TRP334, ILE335, THR336, SER410, VAL411, GLY412, GLU413, PRO414 and 11 more
  • 8W0B · Crystal structure of Acetyl-CoA synthetase 2 from Candida albicans in complex with a… · YHK A701 · binds ILE340, THR341, VAL416, GLY417, GLU418, PRO419, ASP441, THR442 and 12 more

Residues it binds most

THR 6, ASP 6, GLU 6, ILE 6, TRP 6, ARG 6, GLY 6, PRO 6, TYR 6, VAL 6 (residue and the binding sites it lines).

Found with

  • NA · Sodium ion
  • SO4 · Sulfate ion
  • EDO · 1,2-ethanediol
  • GOL · Glycerol

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