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Ligand · YHD

YHD · N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide

YHD, N-[(1R)-2-([1,1'-biphenyl]-4-yl)-1-boronoethyl]-1-methyl-L-prolinamide (C20 H25 B N2 O3, 352.2 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the…

Component
YHD
Formula
C20 H25 B N2 O3
Class
ligand
Structures
3
PDB entries
2

Binding sites

YHD in 3 structures; the first of them:

  • 7LXU · Structure of Plasmodium falciparum 20S proteasome with bound MPI-5 · YHD L301 · binds THR1, ARG19, ALA20, SER21, MET22, VAL31, GLU32, LYS33 and 7 more
  • 7LXU · Structure of plasmodium falciparum 20S proteasome with bound mpi-5 · YHD L301 · binds THR1, ARG19, ALA20, SER21, MET22, VAL31, GLU32, LYS33 and 7 more
  • 7LXV · Structure of human 20S proteasome with bound mpi-5 · YHD K301 · binds THR1, ARG19, ALA20, THR21, VAL31, LYS32, MET45, GLY47 and 4 more

Residues it binds most

ALA 6, GLY 6, MET 6, THR 6, TYR 6, ARG 6, LYS 6, SER 6, VAL 6, CYS 4 (residue and the binding sites it lines).

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