Ligand · YDL
YDL · N-(methoxycarbonyl)-3-methyl-L-valyl-(4R)-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-(trifluoromethyl)-L-prolinamide
YDL, N-(methoxycarbonyl)-3-methyl-L-valyl-(4R)-N-{(1Z,2S)-1-imino-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-4-(trifluoromethyl)-L-prolinamide (C21 H32 F3 N5 O5, 491.5 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB…
- Component
- YDL
- Formula
- C21 H32 F3 N5 O5
- Class
- ligand
- Structures
- 3
- PDB entries
- 3
Binding sites
YDL in 3 structures; the first of them:
- 8V4U · Structure of SARS-CoV-2 main protease in complex with a covalent inhibitor · YDL A401 · binds HIS41, MET49, TYR54, PHE140, LEU141, ASN142, GLY143, SER144 and 13 more
- 9BOO · Crystal structure of MERS-CoV Nsp5 in complex with PF-07817883 · YDL A401 · binds HIS41, LEU49, TYR54, PHE143, LEU144, CYS145, GLY146, SER147 and 13 more
- 9BPF · Crystal structure of main protease of SARS-CoV-2 complexed with inhibitor · YDL A401 · binds HIS41, MET49, TYR54, PHE140, LEU141, ASN142, GLY143, SER144 and 14 more
Residues it binds most
HIS 5, GLN 5, LEU 5, MET 5, SER 5, CYS 5, ASP 5, GLU 5, GLY 5, PHE 5 (residue and the binding sites it lines).
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