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Ligand · YDK

YDK · 2-(carbamoylamino)-5-phenyl-N-[(3S)-piperidin-3-yl]thiophene-3-carboxamide

YDK, 2-(carbamoylamino)-5-phenyl-N-[(3S)-piperidin-3-yl]thiophene-3-carboxamide (C17 H20 N4 O2 S, 344.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the…

Component
YDK
Formula
C17 H20 N4 O2 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

YDK in 2 structures; the first of them:

  • 2YDK · Discovery of Checkpoint Kinase Inhibitor AZD7762 by Structure Based Design and… · YDK A1277 · binds LEU15, GLY16, GLU17, VAL23, ALA36, VAL68, LEU84, GLU85 and 10 more
  • 2YDK · Discovery of checkpoint kinase inhibitor AZD7762 by structure based design and… · YDK A1277 · binds LEU15, GLY16, GLU17, VAL23, ALA36, VAL68, LEU84, GLU85 and 10 more

Residues it binds most

GLU 2, LEU 2, GLY 2, SER 2, VAL 2, ALA 2, ASN 2, ASP 2, CYS 2, TYR 2 (residue and the binding sites it lines).

Found with

  • SO4 · Sulfate ion
  • GOL · Glycerol

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