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Ligand · YD8

YD8 · 1-[2,4-dimethyl-5-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-pyrrol-3-yl]ethanone

YD8, 1-[2,4-dimethyl-5-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-pyrrol-3-yl]ethanone (C20 H25 N5 O, 351.4 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues…

Component
YD8
Formula
C20 H25 N5 O
Class
ligand
Structures
2
PDB entries
1

Binding sites

YD8 in 2 structures; the first of them:

  • 7EHY · BRD4-BD1 in complex with LT-448-138 · YD8 A201 · binds TRP39, PRO40, PHE41, GLN43, VAL45, LEU50, LEU52, TYR55 and 4 more
  • 7EHY · BRD4-BD1 in complex with lt-448-138 · YD8 A201 · binds TRP39, PRO40, PHE41, GLN43, VAL45, LEU50, LEU52, TYR55 and 4 more

Residues it binds most

LEU 2, TYR 2, ASN 2, CYS 2, GLN 2, ILE 2, PHE 2, PRO 2, TRP 2, VAL 2 (residue and the binding sites it lines).

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