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Ligand · YBT

YBT · Bis-(2-hydroxyethyl)amino-tris(hydroxymethyl)methane yttrium

YBT, Bis-(2-hydroxyethyl)amino-tris(hydroxymethyl)methane yttrium (C8 H19 N O5 Y, 298.1 g/mol), in the MolNFT structures on GenesisL1: bound in 8 records (4 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
YBT
Formula
C8 H19 N O5 Y
Class
ligand
Structures
8
PDB entries
4

Binding sites

YBT in 8 structures; the first of them:

  • 1MBU · Crystal Structure Analysis of ClpSN heterodimer · YBT A143 · binds ARG41, GLU42, GLU45
  • 1MBX · CRYSTAL STRUCTURE ANALYSIS OF ClpSN WITH TRANSITION METAL ION BOUND · YBT A211 · binds ARG41, GLU42, GLU45
  • 1R6O · ATP-dependent Clp protease ATP-binding subunit clpA/ATP-dependent Clp protease adaptor… · YBT A412 · binds ARG41, GLU42, GLU45
  • 1R6Q · ClpNS with fragments · YBT A144 · binds ARG41, GLU42, GLU45
  • 1MBU · Crystal structure analysis of clpsn heterodimer · YBT A143 · binds ARG41, GLU42, GLU45
  • 1MBX · Crystal structure analysis of clpsn with transition metal ion bound · YBT A211 · binds ARG41, GLU42, GLU45
  • 1R6O · ATP-dependent clp protease ATP-binding subunit CLPA/ATP-dependent clp protease adaptor… · YBT A412 · binds ARG41, GLU42, GLU45
  • 1R6Q · Clpns with fragments · YBT A144 · binds ARG41, GLU42, GLU45

Residues it binds most

GLU 34, ASP 10, ARG 16, MET 10, ASN 10, GLN 8, LEU 8, HIS 2, PRO 2, THR 2 (residue and the binding sites it lines).

Found with

  • GOL · Glycerol
  • CL · Chloride ion
  • Y1 · Yttrium ion
  • ZN · Zinc ion

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