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Ligand · YBJ

YBJ · (2~{S},4~{S},5~{R},6~{S})-4-azanyl-5-methoxy-6-methyl-oxan-2-ol

YBJ, (2~{S},4~{S},5~{R},6~{S})-4-azanyl-5-methoxy-6-methyl-oxan-2-ol (C7 H15 N O3, 161.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (2 PDB entries). Every binding site with its residues within 4.5 Å, the residues it…

Component
YBJ
Formula
C7 H15 N O3
Class
ligand
Structures
2
PDB entries
2

Binding sites

YBJ in 2 structures; the first of them:

  • 7LKC · Crystal Structure of Keratinimicin A · YBJ A102 · binds OMY6, 3FG7, HTY2, PHE3
  • 7LTB · Crystal Structure of Keratinicyclin B · YBJ A102 · binds OMY6, HT02, PHE3

Residues it binds most

OMY 4, PHE 4, 3FG 3, HT0 2, HTY 2 (residue and the binding sites it lines).

Found with

  • BGC · beta-D-glucopyranose
  • MAN · alpha-D-mannopyranose
  • FMT · Formic acid
  • RAM · alpha-L-rhamnopyranose
  • Z6G · 3-ammonio-2,3,6-trideoxy-alpha-L-arabino-hexopyranose
  • CL · Chloride ion

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