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Ligand · YBG

YBG · 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoinositol

YBG, 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoinositol (C43 H81 O13 P, 837.1 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most and…

Component
YBG
Formula
C43 H81 O13 P
Class
ligand
Structures
2
PDB entries
1

Binding sites

YBG in 2 structures; the first of them:

  • 7LQY · Structure of squirrel TRPV1 in apo state · YBG A903 · binds ARG411, HIS412, ASP511, SER512, TYR513, SER514, GLU515, MET516 and 22 more
  • 7LQY · Structure of squirrel TRPV1 in apo state · YBG A903 · binds ARG411, HIS412, ASP511, SER512, TYR513, SER514, MET516, LEU517 and 17 more

Residues it binds most

LEU 8, ILE 8, PHE 8, ALA 8, ARG 8, MET 8, SER 8, TYR 8, GLU 8, ASP 8 (residue and the binding sites it lines).

Found with

  • POV · (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
  • NA · Sodium ion
  • CL · Chloride ion

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