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Ligand · YBE

YBE · tert-butyl [(1R,4s)-4-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-2-[(2S)-6-oxopiperidin-2-yl]-1H-benzimidazol-1-yl}cyclohexyl]carbamate

YBE, tert-butyl [(1R,4s)-4-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-2-[(2S)-6-oxopiperidin-2-yl]-1H-benzimidazol-1-yl}cyclohexyl]carbamate (C28 H37 N5 O4, 507.6 g/mol), in the MolNFT structures on GenesisL1: bound in 1 record (1 PDB entry).…

Component
YBE
Formula
C28 H37 N5 O4
Class
ligand
Structures
1
PDB entries
1

Binding sites

YBE in 1 structure; the first of them:

  • 8FVS · Bromodomain of CBP liganded with CCS1477int · YBE A1201 · binds LEU1109, PRO1110, PHE1111, GLN1113, VAL1115, LEU1119, LEU1120, ILE1122 and 9 more

Residues it binds most

LEU 2, VAL 2, TYR 2, ALA 2, ASN 2, GLN 2, ILE 2, PHE 2, PRO 2, TRP 1 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • EDO · 1,2-ethanediol

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