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Ligand · YB4

YB4 · ~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide

YB4, ~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide (C35 H42 N8 O2, 606.8 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
YB4
Formula
C35 H42 N8 O2
Class
ligand
Structures
2
PDB entries
1

Binding sites

YB4 in 2 structures; the first of them:

  • 7LQD · Structure of Human MPS1 (TTK) covalently bound to RMS-07 inhibitor · YB4 A901 · binds ILE531, GLY534, SER537, LYS538, VAL539, GLN541, ILE549, ALA551 and 15 more
  • 7LQD · Structure of human MPS1 (ttk) covalently bound to rms-07 inhibitor · YB4 A901 · binds ILE531, GLY534, SER537, LYS538, VAL539, GLN541, ILE549, ALA551 and 15 more

Residues it binds most

ILE 2, ALA 2, ASP 2, GLY 2, LYS 2, MET 2, SER 2, ASN 2, CYS 2, GLN 2 (residue and the binding sites it lines).

Found with

  • TOE · 2-[2-(2-methoxy-ethoxy)-ethoxy]-ethoxyl
  • GOL · Glycerol

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