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Ligand · YAT

YAT · emetine

YAT, emetine (C29 H40 N2 O4, 480.6 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with it.

Component
YAT
Formula
C29 H40 N2 O4
Class
ligand
Structures
3
PDB entries
3

Binding sites

YAT in 3 structures; the first of them:

  • 8FVY · 40S subunit of the Giardia lamblia 80S ribosome · YAT 21524 · binds G655, U750, C757, C758, G1420, U1421, GLY117, GLY118 and 1 more
  • 8G4I · 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine… · YAT 21501 · binds G655, U750, C757, C758, G1420, U1421, LEU145
  • 8G4S · 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine… · YAT 21501 · binds G655, U750, C757, G1420, U1421, GLN119, LEU145, A2

Residues it binds most

G 3, U 3, C 3, LEU 3, GLY 1, A 1, GLN 1 (residue and the binding sites it lines).

Found with

  • MG · Magnesium ion
  • ZN · Zinc ion

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