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Ligand · Y7D

Y7D · (2Z)-3-methylhept-2-en-1-yl trihydrogen diphosphate

Y7D, (2Z)-3-methylhept-2-en-1-yl trihydrogen diphosphate (C8 H18 O7 P2, 288.2 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its residues within 4.5 Å, the residues it binds most…

Component
Y7D
Formula
C8 H18 O7 P2
Class
ligand
Structures
2
PDB entries
1

Binding sites

Y7D in 2 structures; the first of them:

  • 7LNX · I146A mutant of the isopentenyl phosphate kinase from Candidatus methanomethylophilus… · Y7D A502 · binds LYS5, GLY7, GLY8, LYS14, GLY44, ALA45, GLY46, GLY49 and 10 more
  • 7LNX · I146A mutant of the isopentenyl phosphate kinase from candidatus methanomethylophilus… · Y7D A502 · binds LYS5, GLY8, LYS14, GLY44, ALA45, GLY46, GLY49, HIS50 and 8 more

Residues it binds most

GLY 2, ALA 2, LYS 2, VAL 2, ASP 2, GLN 2, HIS 2, SER 2 (residue and the binding sites it lines).

Found with

  • ADP · Adenosine-5'-diphosphate
  • WOG · (2E)-3-methylhept-2-en-1-yl dihydrogen phosphate
  • GOL · Glycerol

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