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Ligand · Y5V

Y5V · 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide

Y5V, 5-hydroxy-N-[2-(4-hydroxy-3-methoxyphenyl)ethyl]-2-(2-methylphenyl)-6-oxo-1,6-dihydropyrimidine-4-carboxamide (C21 H21 N3 O5, 395.4 g/mol), in the MolNFT structures on GenesisL1: bound in 3 records (2 PDB entries). Every binding site…

Component
Y5V
Formula
C21 H21 N3 O5
Class
ligand
Structures
3
PDB entries
2

Binding sites

Y5V in 3 structures; the first of them:

  • 7LM4 · The crystal structure of the I38T mutant PA Endonuclease (2009/H1N1/CALIFORNIA) in… · Y5V A203 · binds ALA20, TYR24, GLU26, LYS34, ALA37, THR38, HIS41, GLU80 and 5 more
  • 7LM4 · The crystal structure of the I38T mutant pa endonuclease (2009/H1N1/CALIFORNIA) in… · Y5V A203 · binds ALA20, TYR24, GLU26, LYS34, ALA37, THR38, HIS41, GLU80 and 5 more
  • 7MY5 · The crystal structure of wild type pa endonuclease (2009/H1N1/CALIFORNIA) in complex with… · Y5V A203 · binds ALA20, MET21, TYR24, GLU26, LYS34, ILE38, HIS41, GLU80 and 4 more

Residues it binds most

GLU 3, TYR 3, ALA 3, LYS 3, ILE 3, ASP 3, HIS 3, THR 2, MET 1 (residue and the binding sites it lines).

Found with

  • QQ4 · Hexa Vinylpyrrolidone K15
  • MN · Manganese (II) ion
  • SO4 · Sulfate ion

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