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Ligand · Y54

Y54 · 5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1R,3S)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide

Y54, 5-[(azetidin-3-yl)amino]-N-[(1R)-1-{3-[5-({[(1R,3S)-3-hydroxycyclopentyl]amino}methyl)thiophen-2-yl]phenyl}ethyl]-2-methylbenzamide (C29 H36 N4 O2 S, 504.7 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB…

Component
Y54
Formula
C29 H36 N4 O2 S
Class
ligand
Structures
2
PDB entries
1

Binding sites

Y54 in 2 structures; the first of them:

  • 7LLF · SARS-CoV-2 papain-like protease (PLpro) bound to inhibitor XR8-83 · Y54 A407 · binds LEU162, GLY163, ASP164, GLU167, PRO247, PRO248, TYR264, GLY266 and 6 more
  • 7LLF · SARS-cov-2 papain-like protease (plpro) bound to inhibitor XR8-83 · Y54 A407 · binds LEU162, GLY163, ASP164, GLU167, PRO248, TYR264, GLY266, TYR268 and 3 more

Residues it binds most

TYR 4, GLY 4, PRO 4, GLN 4, ASP 4, GLU 4, LEU 4, THR 4, ASN 2 (residue and the binding sites it lines).

Found with

  • ZN · Zinc ion
  • BO3 · Boric acid
  • SO4 · Sulfate ion
  • GOL · Glycerol

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