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Ligand · Y3A

Y3A · N-[(benzyloxy)carbonyl]glycyl-N-[(2S,3R)-4-chloro-3-hydroxy-1-phenylbutan-2-yl]glycinamide

Y3A, N-[(benzyloxy)carbonyl]glycyl-N-[(2S,3R)-4-chloro-3-hydroxy-1-phenylbutan-2-yl]glycinamide (C22 H26 Cl N3 O5, 447.9 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its…

Component
Y3A
Formula
C22 H26 Cl N3 O5
Class
ligand
Structures
6
PDB entries
3

Binding sites

Y3A in 6 structures; the first of them:

  • 4HXF · Acylaminoacyl peptidase in complex with Z-Gly-Gly-Phe-chloromethyl ketone · Y3A B701 · binds GLY386, GLY387, SER466, TYR467, ILE491, TRP494, SER497, ILE503 and 5 more
  • 4RE5 · Acylaminoacyl peptidase complexed with a chloromethylketone inhibitor · Y3A A601 · binds GLY368, GLY369, PRO370, SER445, TYR446, VAL471, TRP474, MET477 and 7 more
  • 4RE6 · Acylaminoacyl peptidase complexed with a chloromethylketone inhibitor · Y3A A601 · binds GLY368, GLY369, PRO370, SER445, TYR446, VAL471, TRP474, MET477 and 7 more
  • 4HXF · Acylaminoacyl peptidase in complex with Z-gly-gly-phe-chloromethyl ketone · Y3A B701 · binds GLY386, GLY387, SER466, TYR467, ILE491, TRP494, SER497, ILE503 and 5 more
  • 4RE5 · Acylaminoacyl peptidase complexed with a chloromethylketone inhibitor · Y3A A601 · binds GLY368, GLY369, PRO370, SER445, TYR446, VAL471, TRP474, MET477 and 7 more
  • 4RE6 · Acylaminoacyl peptidase complexed with a chloromethylketone inhibitor · Y3A A601 · binds GLY368, GLY369, PRO370, SER445, TYR446, VAL471, TRP474, MET477 and 7 more

Residues it binds most

GLY 10, PHE 10, ILE 10, SER 10, ARG 10, HIS 10, TRP 10, TYR 10, LEU 8, MET 8 (residue and the binding sites it lines).

Found with

  • CL · Chloride ion
  • MG · Magnesium ion
  • ACT · Acetate ion
  • HEZ · Hexane-1,6-diol
  • MPD · (4S)-2-methyl-2,4-pentanediol

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