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Ligand · Y19

Y19 · 1-deoxy-1-{[(5S)-2,6-dioxo-5-(propanoylamino)-1,2,5,6-tetrahydropyrimidin-4-yl]amino}-D-ribitol

Y19, 1-deoxy-1-{[(5S)-2,6-dioxo-5-(propanoylamino)-1,2,5,6-tetrahydropyrimidin-4-yl]amino}-D-ribitol (C12 H20 N4 O7, 332.3 g/mol), in the MolNFT structures on GenesisL1: bound in 2 records (1 PDB entry). Every binding site with its…

Component
Y19
Formula
C12 H20 N4 O7
Class
ligand
Structures
2
PDB entries
1

Binding sites

Y19 in 2 structures; the first of them:

  • 2VI5 · LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO… · Y19 A201 · binds SER25, TRP27, HIS28, GLY58, ALA59, ILE60, GLU61, VAL81 and 11 more
  • 2VI5 · Lumazine synthase from mycobacterium tuberculosis bound to N-6… · Y19 A201 · binds SER25, TRP27, HIS28, GLY58, ALA59, ILE60, GLU61, VAL81 and 11 more

Residues it binds most

ALA 20, VAL 20, HIS 20, ILE 20, GLY 20, ASN 20, GLU 20, PHE 20, SER 20, TRP 20 (residue and the binding sites it lines).

Found with

  • K · Potassium ion
  • PO4 · Phosphate ion

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